Additional file 1 of Chromosome-level genome assembly and population genomic analyses provide insights into adaptive evolution of the red turpentine beetle, Dendroctonus valens

Additional file 1: Table S1. Summary statistics of genome sequencing data of Dendroctonus valens. Table S2. Summary statistics of genome assembly of Dendroctonus valens. Table S3. BUSCO evaluation result for genome assembly of Dendroctonus valens. Table S4. Summary statistics of transposable elements in Dendroctonus valens genome. Table S5. Summary of gene families manually curated in Dendroctonus valens genome. Table S6. Summary statistics of genome annotation in Dendroctonus valens genome. Table S7. List of gene families that are unique in Dendroctonus valens compared to other three Coleoptera species. Table S8. Gene families that are rapidly expanded in Dendroctonus valens revealed by CAFE analysis. Table S9. Gene families that are rapidly contracted in Dendroctonus valens revealed by CAFE analysis. Table S10. List of genes that are positively selected in Dendroctonus valens revealed by codeml analysis. Table S11. Gene ontology enrichment result of positively selected genes in Dendroctonus valens. Table S12. Sampling site information for genome resequencing of geographical populations. Table S13. Summary statistics of genome resequencing data in different populations. Table S14. List of genes that undergo selective sweep in the China population compared to CAMT population.

附加文件1：表S1 红脂大小蠹（Dendroctonus valens）基因组测序数据汇总统计。表S2 红脂大小蠹基因组组装结果汇总统计。表S3 红脂大小蠹基因组组装的BUSCO（Benchmarking Universal Single-Copy Orthologs）评估结果。表S4 红脂大小蠹基因组中转座元件汇总统计。表S5 红脂大小蠹基因组中经人工手动整理注释的基因家族汇总。表S6 红脂大小蠹基因组注释结果汇总统计。表S7 相较于其余3种鞘翅目昆虫，红脂大小蠹所特有的基因家族列表。表S8 经CAFE分析揭示的红脂大小蠹中快速扩张的基因家族。表S9 经CAFE分析揭示的红脂大小蠹中快速收缩的基因家族。表S10 经codeml分析揭示的红脂大小蠹中受正向选择的基因列表。表S11 红脂大小蠹中受正向选择基因的基因本体（Gene Ontology，GO）富集分析结果。表S12 地理种群基因组重测序的采样位点信息。表S13 不同种群基因组重测序数据汇总统计。表S14 相较于CAMT种群，中国种群中经历选择性清除的基因列表。