Additional file 6: Table S6. of In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR

Genes of A. niger encoding pectinolytic enzymes and their expression in ΔlraA, ΔlraB, ΔlraC, ΔrhaR mutants and the reference strain after a 2 h transfer to L-rhamnose. The expression levels are mean values of duplicate samples. Genes with values higher than 120 are considered highly expressed and marked red. Genes with values lower than 20 are considered low expressed and marked green. The fold change is the difference in expression between the reference strain and the deletion mutants. The cutoff for differential expression is fold change >1.5 (cells marked red if upregulated and green if downregulated) and p-value <0.05 (cells marked yellow). HGA = homogalacturonic acid, XGA = xylogalacturonan, RG-I = Rhamnogalacturonan-I, SC = side chains. (XLSX 624 kb)黑曲霉（A. niger）中编码果胶酶的基因，以及这些基因在ΔlraA、ΔlraB、ΔlraC、ΔrhaR缺失突变体与参考菌株转接至L-鼠李糖中培养2小时后的表达情况。基因表达水平为生物学重复样本的均值。表达值高于120的基因被判定为高表达基因，标记为红色；表达值低于20的基因被判定为低表达基因，标记为绿色。倍数变化为参考菌株与各缺失突变体之间的表达差异。差异表达的筛选阈值为：倍数变化>1.5（上调基因对应单元格标记为红色，下调基因对应单元格标记为绿色）且p值<0.05（对应单元格标记为黄色）。其中HGA（homogalacturonic acid，同型半乳糖醛酸聚糖）、XGA（xylogalacturonan，木糖半乳糖醛酸聚糖）、RG-I（Rhamnogalacturonan-I，鼠李糖半乳糖醛酸聚糖-I）、SC（side chains，侧链）。本数据集为XLSX格式文件，大小624 KB。