Additional file 1 of Genome-wide analysis of retinal transcriptome reveals common genetic network underlying perception of contrast and optical defocus detection

Additional file 1: Table S1. Refractive errors in mice comprising collaborative cross (P40, diopters). Table S2. Form-deprivation myopia in mice comprising collaborative cross (deprived eye versus control eye, diopters). Table S3. Contrast sensitivity in mice comprising collaborative cross. Table S4. Genes whose expression correlates with refractive error in mice comprising collaborative cross (FC = fold change, hyperopia versus myopia). Table S5. Genes whose expression correlates with susceptibility to myopia in mice comprising collaborative cross (FC = fold change, high versus low myopia). Table S6. Genes whose expression correlates with contrast sensitivity in mice comprising collaborative cross (FC = fold change, high versus low contrast sensitivity). Table S7. Gene ontology categories associated with genes whose expression correlates with refractive error in mice comprising collaborative cross (BP, biological process; CC, cellular component; MF, molecular function). Table S8. Gene ontology categories associated with genes whose expression correlates with susceptibility to myopia in mice comprising collaborative cross (BP, biological process; CC, cellular component; MF, molecular function). Table S9. Gene ontology categories associated with genes whose expression correlates with contrast sensitivity in mice comprising collaborative cross (BP, biological process; CC, cellular component; MF, molecular function). Table S10. Canonical pathways associated with genes whose expression correlates with refractive error in mice comprising collaborative cross. Table S11. Canonical pathways associated with genes whose expression correlates with susceptibility to myopia in mice comprising collaborative cross. Table S12. Canonical pathways associated with genes whose expression correlates with contrast sensitivity in mice comprising collaborative cross. Table S13. Genes whose expression correlates with both contrast sensitivity and refractive error in mice comprising collaborative cross (FC = fold change, contrast sensitivity = high versus low contrast sensitivity, RE = hyperopia versus myopia). Table S14. Genes whose expression correlates with both contrast sensitivity and susceptibility to myopia in mice comprising collaborative cross (FC = fold change, contrast sensitivity = high versus low contrast sensitivity, myopia = high versus low myopia). Table S15. Gene ontology categories associated with genes whose expression correlates with both contrast sensitivity and refractive error in mice comprising collaborative cross (BP, biological process; CC, cellular component; MF, molecular function). Table S16. Gene ontology categories associated with genes whose expression correlates with both contrast sensitivity and susceptibility to myopia in mice comprising collaborative cross (BP, biological process; CC, cellular component; MF, molecular function). Table S17. Genes whose expression correlates with both contrast sensitivity and refractive error in mice comprising collaborative cross and linked to human diseases (FC = fold change, high versus low contrast sensitivity). Table S18. Genes whose expression correlates with both contrast sensitivity and susceptibility to myopia in mice comprising collaborative cross and linked to human diseases (FC = fold change, high versus low contrast sensitivity). (XLS 898 KB)