Additional file 3: of Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds

Table of the shared genome of E. coli O157:H− strain 3072/96, E. coli O104:H4 strain C227–11φcu, E. coli O157:H7 strain Sakai and E. coli strain K-12 substrain MG1655. For every homologous gene group (rows with unique identifier) the genes of the respective strains (columns) are listed. Names of homologous gene group are based on gene names of E. coli MG1655, if a respective homolog of this strain is present in the group. For homologous relationships between genes, a minimal nucleotide identity of 90% and length-coverage of 75% was assumed. The calculation of the shared genome was performed on the basis of a whole genome alignment of the four strains and a subsequent refinement by a RBH BLAST approach. (XLSX 476 kb)本表格收录大肠杆菌（E. coli）O157:H−菌株3072/96、大肠杆菌O104:H4菌株C227–11φcu、大肠杆菌O157:H7菌株Sakai及大肠杆菌K-12亚菌株MG1655的共有基因组信息。对于每个带有唯一标识符的同源基因组群（以行形式呈现），将列出对应菌株的基因（以列形式呈现）。若该同源基因组群中包含大肠杆菌MG1655的同源基因，则同源基因组群的命名将基于大肠杆菌MG1655的基因名称。基因间的同源关系判定阈值为：核苷酸序列一致性最低达90%，且长度覆盖度最低达75%。共有基因组的计算基于上述四株菌株的全基因组比对，随后通过双向最佳匹配BLAST（RBH BLAST）方法进行精修优化。（XLSX格式，476 kb）