Additional file 8: File S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

H3K27me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S2. Second H3K27me3 data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S3. H3K4me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S4. Second H3K4me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S5. H2A.Z data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S6. TRRAP data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S7. FOXA1 data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S8. STAT6 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S9. AR data QC report from ChiLin. This report includes two immunoprecipitated and two input samples. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S10. RAD21 paired end data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S11. RAG2 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S12. CHD7 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S13. DNase-seq QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. (GZ 9019Â kb)来自ChiLin的H3K27me3数据质量控制（Quality Control，QC）报告。测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S2。第二份来自ChiLin的H3K27me3数据质量控制报告，测序读段已通过BWA与Bowtie比对至hg38基因组组装版本，对应文件S3。来自ChiLin的H3K4me3数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S4。第二份来自ChiLin的H3K4me3数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S5。来自ChiLin的H2A.Z数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S6。来自ChiLin的TRRAP数据质量控制报告，测序读段已通过BWA与Bowtie比对至hg38基因组组装版本，对应文件S7。来自ChiLin的FOXA1数据质量控制报告，测序读段已通过BWA与Bowtie比对至hg38基因组组装版本，对应文件S8。来自ChiLin的STAT6数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S9。来自ChiLin的AR数据质量控制报告，该报告包含两份免疫沉淀样本与两份输入对照样本，测序读段已通过BWA与Bowtie比对至hg38基因组组装版本，对应文件S10。来自ChiLin的RAD21双端测序数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S11。来自ChiLin的RAG2数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S12。来自ChiLin的CHD7数据质量控制报告，测序读段已通过BWA与Bowtie比对至mm10基因组组装版本，对应文件S13。来自ChiLin的DNase-seq数据质量控制报告，测序读段已通过BWA与Bowtie比对至hg38基因组组装版本，（GZ 9019 kb）。