Location of gene models of C. fulvum in regions syntenic or non-syntenic with the D. septosporum genome.
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aValues are numbers of gene models located in regions of the C. fulvum genome syntenic or non-syntenic with the D. septosporum genome as described in Materials and Methods.bFor all proteins the percentage of gene models represents the fraction of all gene models present in the C. fulvum genome; for other categories (BDBH, secreted proteins, secreted Cys-rich proteins) the percentage of gene models represents the fraction of gene models present in syntenic and non-syntenic regions.cAll proteins encoded by predicted gene models in the C. fulvum genome.dBi-directional best BLAST hit between C. fulvum and D. septosporum proteins with at least 50% (global) pairwise amino acid similarity and at least 60% coverage by overlap-corrected blastp HSPs.eGene models predicted to encode secreted proteins.fSecreted small cysteine-rich proteins contain less than 300 amino acids of which at least four are cysteines.gThe mean amino acid similarities of all protein gene models in syntenic regions and non-syntenic regions are 85.2% and 65.1%, respectively.hThe mean amino acid similarities of secreted protein gene models in syntenic regions and non-syntenic regions are 81.1% and 60.7%, respectively.
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2015-12-02



