Location of gene models of C. fulvum in regions syntenic or non-syntenic with the D. septosporum genome.

aValues are numbers of gene models located in regions of the C. fulvum genome syntenic or non-syntenic with the D. septosporum genome as described in Materials and Methods.bFor all proteins the percentage of gene models represents the fraction of all gene models present in the C. fulvum genome; for other categories (BDBH, secreted proteins, secreted Cys-rich proteins) the percentage of gene models represents the fraction of gene models present in syntenic and non-syntenic regions.cAll proteins encoded by predicted gene models in the C. fulvum genome.dBi-directional best BLAST hit between C. fulvum and D. septosporum proteins with at least 50% (global) pairwise amino acid similarity and at least 60% coverage by overlap-corrected blastp HSPs.eGene models predicted to encode secreted proteins.fSecreted small cysteine-rich proteins contain less than 300 amino acids of which at least four are cysteines.gThe mean amino acid similarities of all protein gene models in syntenic regions and non-syntenic regions are 85.2% and 65.1%, respectively.hThe mean amino acid similarities of secreted protein gene models in syntenic regions and non-syntenic regions are 81.1% and 60.7%, respectively.a) 数值为按《材料与方法》所述，位于与松针褐斑病菌（Dothistroma septosporum，D. septosporum）基因组存在共线性或非共线性关系的番茄叶霉病菌（Cladosporium fulvum，C. fulvum）基因组区域内的基因模型数量。 b) 对于所有蛋白质而言，基因模型占比指番茄叶霉病菌（C. fulvum）基因组中全部基因模型的占比；对于BDBH、分泌蛋白、分泌型富半胱氨酸蛋白等其他类别，基因模型占比指共线性与非共线性区域内存在的基因模型的占比。 c) 所有由番茄叶霉病菌（C. fulvum）基因组中预测得到的基因模型所编码的蛋白质。 d) 番茄叶霉病菌（C. fulvum）与松针褐斑病菌（D. septosporum）蛋白质间的双向最佳BLAST比对结果，且需满足全局成对氨基酸相似性≥50%、经重叠校正的blastp高评分段（HSP）覆盖度≥60%。 e) 被预测可编码分泌蛋白的基因模型。 f) 分泌型小分子量富半胱氨酸蛋白指氨基酸长度小于300个氨基酸，且其中半胱氨酸残基数≥4的蛋白质。 g) 共线性区域与非共线性区域内所有蛋白质基因模型的平均氨基酸相似性分别为85.2%与65.1%。 h) 共线性区域与非共线性区域内分泌蛋白基因模型的平均氨基酸相似性分别为81.1%与60.7%。