Additional file 2: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species
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Table S2. Protein domains (Pfam) specifically associated with epigenetic factors. For each of the 6 model species, number of proteins belonging to DNMT, histones, histone modifying enzymes (Histone Acetyltransferases, HAT; Histone deacetylases, HDAC; Histone methyltransferases, HMT; Histone demethylases, HDMT; Histone kinases, HK; Histone phosphatases, HP; Histone ubiquitinyl-transferases, HUT; Histone deubiquitinases, HDU), and Argonautes are indicated, as well as the specific protein domains (Pfam) that constitute the “Pfam epigenetic factor list”. (XLSX 13 kb)
补充表S2:与表观遗传因子特异性相关的蛋白质结构域(Pfam)。针对6个模式物种,本表格分别统计了隶属于DNA甲基转移酶(DNMT)、组蛋白、组蛋白修饰酶[含组蛋白乙酰转移酶(Histone Acetyltransferases,HAT)、组蛋白去乙酰化酶(Histone deacetylases,HDAC)、组蛋白甲基转移酶(Histone methyltransferases,HMT)、组蛋白去甲基化酶(Histone demethylases,HDMT)、组蛋白激酶(Histone kinases,HK)、组蛋白磷酸酶(Histone phosphatases,HP)、组蛋白泛素转移酶(Histone ubiquitinyl-transferases,HUT)与组蛋白去泛素化酶(Histone deubiquitinases,HDU)]以及Argonaute蛋白(Argonautes)的蛋白质数量,同时列出了构成"Pfam表观遗传因子列表"的特异性蛋白质结构域(Pfam)。本文件格式为XLSX,大小13 KB。
创建时间:
2018-05-04



