Additional file 9 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 9: Table S1. A list of gene markers for macrophages when near tumor cells as opposed to hepatocytes as found by niche-DE. Table S2. A list of gene markers for macrophages when hepatocytes as opposed to tumor cells as found by niche-DE. Table S3. A list of ligand-receptor pairs found by niche-LR for macrophages when near tumor cells. Table S4. A list of (macrophage, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S5. The list of enriched pathways found by enrichR using the gene list in table S4. Table S6. The list of enriched pathways found by enrichR using the gene list in table S1.

附加文件9：表S1。本表格收录了通过微环境差异表达分析（niche-DE）筛选得到的、肿瘤细胞邻近巨噬细胞相较于肝细胞的基因标志物列表。
表S2。本表格收录了通过微环境差异表达分析（niche-DE）筛选得到的、巨噬细胞邻近肝细胞时相较于肿瘤细胞的基因标志物列表。
表S3。本表格收录了通过微环境配体-受体分析（niche-LR）筛选得到的、肿瘤细胞邻近巨噬细胞的配体-受体对列表。
表S4。本表格收录了在整合的10X结直肠癌肝转移数据中，通过微环境差异表达分析（niche-DE）筛选得到的巨噬细胞与肿瘤细胞相关基因列表。
表S5。本表格收录了以表S4中的基因集为输入，通过enrichR富集分析得到的富集通路列表。
表S6。本表格收录了以表S1中的基因集为输入，通过enrichR富集分析得到的富集通路列表。