Additional file 3 of Genome-wide identification and expression analysis of the coronatine-insensitive 1 (COI1) gene family in response to biotic and abiotic stresses in Saccharum

Additional file 3: Table S1. Identification of COI1 genes in different plants. Table S2. Conserved amino acid residues of COI1 proteins among different groups. Table S3. Characterization of SbCOI1, ShCOI1, and SsCOI1 genes. Table S4. Secondary structure analysis of SbCOI1, ShCOI1, and SsCOI1 proteins. Table S5. Percentage of identity between 7 SbCOI1s, 6 ShCOI1s, and 21 SsCOI1s was calculated using DNAMAN software. Table S6. Ten conserved motifs predicted in the COI1 proteins. Table S7. The gene type of COI1 genes in Sorghum bicolor, Saccharum spp. hybrid cultivar R570, and Saccharum spontaneum. Table S8. Syntenic relationships and selection pressure among Sorghum bicolor, Saccharum spp. hybrid cultivar R570, and Saccharum spontaneum. Table S9. Promoter cis-regulatory elements analysis of SbCOI1, ShCOI1, and SsCOI1 genes. Table S10. Sources of COI1 genes from sequenced species included in this study. Table S11 Primers used in this study.

附加文件3：表S1。不同植物中COI1基因的鉴定。表S2。不同类群COI1蛋白的保守氨基酸残基分析。表S3。SbCOI1、ShCOI1及SsCOI1基因的特征解析。表S4。SbCOI1、ShCOI1及SsCOI1蛋白的二级结构分析。表S5。使用DNAMAN软件计算7个SbCOI1、6个ShCOI1与21个SsCOI1之间的序列一致性百分比。表S6。COI1蛋白中预测得到的10个保守基序。表S7。双色高粱（Sorghum bicolor）、甘蔗杂交品种R570（Saccharum spp. hybrid cultivar R570）及甜根子草（Saccharum spontaneum）中COI1基因的类型。表S8。双色高粱、甘蔗杂交品种R570及甜根子草之间的共线性关系与选择压力分析。表S9。SbCOI1、ShCOI1及SsCOI1基因的启动子顺式调控元件分析。表S10。本研究纳入的已测序物种中COI1基因的来源。表S11。本研究中使用的引物。