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Multi-subject simulated scRNA-seq trajectory data

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Mendeley Data2024-05-10 更新2024-06-29 收录
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https://zenodo.org/records/8433077
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资源简介:
- Simulated scRNA-seq counts with a trajectory structure - Simulation was performed using the scaffold R package - Based on pancreas reference dataset from Baron et al (2017) - Data are comprised of 3 subjects with 400 cells apiece for a total of 1200 cells - Counts have been processed using a SingleCellExperiment-based workflow (normalization, dimension reduction, clustering) - Ground-truth pseudotime for each cell is stored in the colData slot in the variable cell_time_normed

带有轨迹结构的模拟单细胞RNA测序(single-cell RNA sequencing, scRNA-seq)计数数据——模拟过程通过scaffold R软件包完成;本数据集基于Baron等人2017年发布的胰腺参考数据集;数据集包含3名受试者,每名受试者含400个细胞,总计1200个细胞;计数数据已通过基于SingleCellExperiment的分析流程完成预处理,涵盖标准化、降维与聚类步骤;每个细胞的真实伪时间存储于colData数据槽的cell_time_normed变量中。
创建时间:
2023-10-16
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