Additional file 8 of The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge

Additional file 8: Supplementary Table 8: C. virginica IAP haplotigs identified. C. virginica IAP proteins identified as likely assembly artifacts (haplotigs). Read counts for IAP proteins resulting from these assembly errors were combined with their most similar protein (“Protein Haplotig Collapsed Into”) for differential expression and WGCNA analysis (see Methods). Due to lack of a chromosome-based assembly for C. gigas at the time this analysis was conducted, manual haplotig analysis was not performed in this species. (XLS 29 kb)

附加文件8：补充表8：已鉴定的美洲牡蛎（C. virginica）IAP单倍型重叠群（haplotigs）。本补充表收录的美洲牡蛎IAP蛋白被判定为潜在组装伪影（单倍型重叠群）。由这些组装错误产生的IAP蛋白读段计数，将与其最相似的蛋白（即"被整合的单倍型重叠群蛋白"，原文标注为"Protein Haplotig Collapsed Into"）合并，用于差异表达分析与加权基因共表达网络分析（Weighted Gene Co-expression Network Analysis, WGCNA）（详见方法部分）。由于本分析开展时，太平洋牡蛎（C. gigas）尚未有染色体级别的基因组组装序列，因此未对该物种开展人工单倍型重叠群分析。（XLS格式，文件大小29 KB）