PLINK files (ped and map) of wild and domestic goat species

We compiled the comprehensive SNP dataset of wild and domestic goats. Samples were genotyped with Illumina Goat SNP50 BeadChip. We complemented those genotypes with published data from animals that were genotyped with the same SNP chip. Complete dataset contain whole genome SNP data of 613 individuals from 10 species, 8 subspecies, and 26 breeds including the outgroup. There are 48.311 autosomal SNPs with a call rate greater than 95%, any other filtering steps, phasing or imputation were not performed on this data. In compressed folder are genotypes in Plink format and a table with samples' information.Publication: Pogorevc N., Dotsev A., Upadhyay M., Sandoval-Castellanos E., Hannemann E., Simčič M., Antoniou A., Papachristou D., Koutsouli P., Rahmatalla S., Brockmann G., Sölkner J., Burger P., Lymberakis P., Poulakakis N., Bizelis I., Zinovieva N., Horvat S. and Medugorac I. Whole-genome SNP genotyping unveils ancestral and recent introgression in wild and domestic goats. Molecular Ecology

本团队精心编纂了涵盖野生和家养山羊的全面性单核苷酸多态性（SNP）数据集。样本经过Illumina Goat SNP50 beadchip进行基因分型。我们补充了与同一SNP芯片进行基因分型的已发表数据。该完整数据集包含来自10个物种、8个亚种和26个品种，包括外群，共613个个体的全基因组SNP数据。数据集中包含48,311个具有大于95%调用率的常染色体SNP，未对该数据执行任何其他过滤步骤、分型或插补。压缩文件夹内包含Plink格式的基因分型数据以及包含样本信息的表格。详见出版物：Pogorevc N.，Dotsev A.，Upadhyay M.，Sandoval-Castellanos E.，Hannemann E.，Simčič M.，Antoniou A.，Papachristou D.，Koutsouli P.，Rahmatalla S.，Brockmann G.，Sölkner J.，Burger P.，Lymberakis P.，Poulakakis N.，Bizelis I.，Zinovieva N.，Horvat S.和Medugorac I.。全基因组SNP分型揭示了野生和家养山羊的祖先和近期杂种化。分子生态学。