Supplementary material from 'The influence of QTL allelic diversity on QTL detection in multi-parent populations: a simulation study in sugar beet'

Datasets, R package software and script allowing to reproduce the simulation scheme proposed in the article.<br>The file EUNAM_Dent_parents_subset_genotypes.txt contains a selection of parent genotype data from maize the EU-NAM Dent population (Bauer et al., 2013) obtained at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50558.<br>The file EUNAM_Dent_parents_markers_subset_genetic_map.txt contains the genetic map information (marker name, chromosome, position in cM) of the marker calculated by Giraud et al. (2014) subset obtained at: http://maizegdb.org/data_center/reference?id=9024747<br>The file mppSim_0.1.0.zip is the R package used for the simulation.<br>The file add_file_4_simulation_reproduction.R is the R script enabling the reproduction of the simulation.<br>References<br>Bauer, E., Falque, M., Walter, H., Bauland, C., Camisan, C., Campo, L., ... &amp; Altmann, T. (2013). Intraspecific variation of recombination rate in maize. Genome biology, 14(9), R103.<br><br>Giraud, H., Lehermeier, C., Bauer, E., Falque, M., Segura, V., Bauland, C., ... &amp; Schipprack, W. (2014). Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. <i>Genetics</i>, <i>198</i>(4), 1717-1734.<br>

本数据集、R包软件及脚本可复现本文提出的模拟方案。
文件EUNAM_Dent_parents_subset_genotypes.txt包含欧盟NAM马齿型（EU-NAM Dent）群体的亲本基因型筛选数据，该群体源自Bauer等（2013）的研究，数据获取网址为http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50558。
文件EUNAM_Dent_parents_markers_subset_genetic_map.txt包含Giraud等（2014）构建的筛选后标记的遗传图谱信息（标记名称、染色体、厘摩（cM）位置），数据获取自http://maizegdb.org/data_center/reference?id=9024747。
文件mppSim_0.1.0.zip为用于模拟分析的R包。
文件add_file_4_simulation_reproduction.R为可复现该模拟过程的R脚本。

参考文献
Bauer, E., Falque, M., Walter, H., Bauland, C., Camisan, C., Campo, L., 等 & Altmann, T. (2013). 玉米重组率的种内变异. 《基因组生物学（Genome Biology）》, 14(9), R103。

Giraud, H., Lehermeier, C., Bauer, E., Falque, M., Segura, V., Bauland, C., 等 & Schipprack, W. (2014). 结合连锁不平衡与多系杂交连锁分析揭示玉米硬粒型与马齿型杂种优势群中杂种表现相关的多等位数量性状位点（Quantitative Trait Locus, QTL）差异. 《遗传学（Genetics）》, 198(4), 1717-1734。