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Raw Nanopore sequencing data of CD-pore-seq V1: TelN PromethION SRICO_PromeR2 11

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Zenodo2026-05-11 更新2026-05-26 收录
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=Raw Nanopore sequencing data of CD-pore-seq V1= ==Author==Zicheng Yu1, Zihao Chen1, Thomas C. Williams1,2, Craig J. Anderson1,3,4, Andrew P. Jackson1,*, Martin A.M. Reijns1,*, Martin S. Taylor1,*1 MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, UK.2 Child Life and Health, University of Edinburgh, UK.3 German Cancer Research Center, Heidelberg, Germany4 Department of Translational Oncology, German Cancer Research Center, Munich, Germany. * Correspondence should be addressed to andrew.jackson@ed.ac.uk, martin.reijns@ed.ac.uk and martin.taylor@ed.ac.uk ==Citation=='Generalised training for DNA modification detection by nanopore sequencing' ==Description==Nanopore sequencing data of libraries to train machine learning models to predict single DNA-embedded ribonucleotides.Ligation kit: LSK-114 (all except for ygDNA) or SQK-NBD114.96 (ygDNA)Flow-cell version: R10.4.1Sequencing device: MinION or PromethION (./TelN/PromethION only) ==TelN==* Sequencing the TelN library (high-complexity randomers surrounding single DNA-embedded ribonucleotides) on a MinION flow-cell (./MinION) or two PromethION flow-cells (PromethION), prepared by CD-pore-seq (with the second strand synthesised by the primer containing TelN recognition sequence, cut and covalently linked by TelN digestion).

CD-pore-seq V1 原始纳米孔测序数据 ==作者==于子诚1, 陈子豪1, Thomas C. Williams1,2, Craig J. Anderson1,3,4, Andrew P. Jackson1,*, Martin A.M. Reijns1,*, Martin S. Taylor1,* 1 英国爱丁堡大学遗传学与癌症研究所MRC人类遗传学研究室 2 英国爱丁堡大学儿童生命与健康学院 3 德国海德堡德国癌症研究中心 4 德国慕尼黑德国癌症研究中心转化肿瘤学系 * 通讯作者请联系:andrew.jackson@ed.ac.uk、martin.reijns@ed.ac.uk及martin.taylor@ed.ac.uk ==引用文献==《纳米孔测序用于DNA修饰检测的通用训练方法》 ==数据集说明==本数据集为用于训练机器学习模型以预测单个嵌入DNA的核糖核苷酸的文库纳米孔测序数据。 连接试剂盒:LSK-114(ygDNA样本除外)或SQK-NBD114.96(仅用于ygDNA样本) 流动槽版本:R10.4.1 测序设备:MinION或PromethION(仅适用于TelN/PromethION数据集) ==TelN数据集==* 本数据集针对TelN文库(包含环绕单个嵌入DNA的核糖核苷酸的高复杂度随机序列)开展测序,所用测序平台为MinION流动槽(./MinION)或两台PromethION流动槽(PromethION);文库通过CD-pore-seq方法构建:由携带TelN识别序列的引物合成第二链,经TelN酶切后进行共价连接。

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2026-03-13
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