遇见数据集

Br soaked lysozyme datasets collected with the mixed scheme implemented in HITO in the ZOO system

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Zenodo2020-07-15 更新2026-05-25 收录
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Bromide soaked lysozyme crystals were used as standard crystals for evaluation of the automated data collection, ZOO, developed at SPring-8 BL32XU. Crystals those sizes ranged 10-100 µm were cryocooled together in the same cryoloop and processed 'mixed scheme' implemented in the ZOO system. Beam size : 10(H) x 15(V) µm<sup>2</sup> After 2D raster scanning the loop, HITO detects 1 crystals for full rotation helical, 7 crystals for partial helical, and 62 crystals for multiple small wedge schemes, respectively. A full rotation helical, partial helical and small wedge datasets contain total oscillation of 60 deg, 40 deg and 5 deg. respectively. The crystals belong to space group P4<sub>3</sub>2<sub>1</sub>2 with mean unit cell parameters a=b=79.1, c=37.5. Data was processed up to 1.50 Å resolution in the published result (Hirata et al. in preparation) using KAMO. <em><strong>&lt;Available data&gt;</strong></em> # Beamline: SPring-8 BL32XU # wavelength 0.9000 A # Detector : EIGER X 9M # ZOO mode: mixed scheme (HITO) ##################################################### # Multiple small wedge datasets # 'CPS1991-05-multi_master.h5' manages 62 datasets ##################################################### # 5.0 deg. / datasets # 0.1 deg. / frame # 50 frames / datasets # 100 frames in each data file ##################################################### hito-CPS1991-05//data/CPS1991-05-multi_data_000001.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000002.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000003.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000004.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000005.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000006.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000007.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000008.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000009.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000010.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000011.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000012.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000013.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000014.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000015.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000016.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000017.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000018.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000019.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000020.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000021.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000022.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000023.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000024.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000025.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000026.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000027.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000028.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000029.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000030.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000031.h5 hito-CPS1991-05//data/CPS1991-05-multi_master.h5 ##################################################### # 'cry-00-??_master.h5' are for 'partial helical' datasets ##################################################### # 40.0 deg. / datasets # 0.1 deg. / frame # 400 frames / datasets # 100 frames in each data file ##################################################### hito-CPS1991-05//data/cry-00-00_data_000001.h5 hito-CPS1991-05//data/cry-00-00_data_000002.h5 hito-CPS1991-05//data/cry-00-00_data_000003.h5 hito-CPS1991-05//data/cry-00-00_data_000004.h5 hito-CPS1991-05//data/cry-00-00_master.h5 hito-CPS1991-05//data/cry-00-01_data_000001.h5 hito-CPS1991-05//data/cry-00-01_data_000002.h5 hito-CPS1991-05//data/cry-00-01_data_000003.h5 hito-CPS1991-05//data/cry-00-01_data_000004.h5 hito-CPS1991-05//data/cry-00-01_master.h5 hito-CPS1991-05//data/cry-00-02_data_000001.h5 hito-CPS1991-05//data/cry-00-02_data_000002.h5 hito-CPS1991-05//data/cry-00-02_data_000003.h5 hito-CPS1991-05//data/cry-00-02_data_000004.h5 hito-CPS1991-05//data/cry-00-02_master.h5 hito-CPS1991-05//data/cry-00-03_data_000001.h5 hito-CPS1991-05//data/cry-00-03_data_000002.h5 hito-CPS1991-05//data/cry-00-03_data_000003.h5 hito-CPS1991-05//data/cry-00-03_data_000004.h5 hito-CPS1991-05//data/cry-00-03_master.h5 hito-CPS1991-05//data/cry-00-04_data_000001.h5 hito-CPS1991-05//data/cry-00-04_data_000002.h5 hito-CPS1991-05//data/cry-00-04_data_000003.h5 hito-CPS1991-05//data/cry-00-04_data_000004.h5 hito-CPS1991-05//data/cry-00-04_master.h5 hito-CPS1991-05//data/cry-00-05_data_000001.h5 hito-CPS1991-05//data/cry-00-05_data_000002.h5 hito-CPS1991-05//data/cry-00-05_data_000003.h5 hito-CPS1991-05//data/cry-00-05_data_000004.h5 hito-CPS1991-05//data/cry-00-05_master.h5 hito-CPS1991-05//data/cry-00-06_data_000001.h5 hito-CPS1991-05//data/cry-00-06_data_000002.h5 hito-CPS1991-05//data/cry-00-06_data_000003.h5 hito-CPS1991-05//data/cry-00-06_data_000004.h5 hito-CPS1991-05//data/cry-00-06_master.h5 ##################################################### # 'cry-01-??_master.h5' are for 'full rotation helical' datasets ##################################################### # 60.0 deg. / datasets # 0.1 deg. / frame # 600 frames / datasets # 100 frames in each data file # ** The program could collect 'full rotation' helical dataset # but 60 deg. was set for this demonstration. ##################################################### hito-CPS1991-05//data/cry-01-00_data_000001.h5 hito-CPS1991-05//data/cry-01-00_data_000002.h5 hito-CPS1991-05//data/cry-01-00_data_000003.h5 hito-CPS1991-05//data/cry-01-00_data_000004.h5 hito-CPS1991-05//data/cry-01-00_data_000005.h5 hito-CPS1991-05//data/cry-01-00_data_000006.h5 hito-CPS1991-05//data/cry-01-00_master.h5

溴化浸泡的溶菌酶晶体被用作标准晶体,用于评估由SPring-8 BL32XU开发的自动化数据收集系统ZOO。 尺寸介于10~100 µm的晶体被置于同一低温环(cryoloop)中一同进行低温冷冻,并采用ZOO系统中内置的「混合模式」完成数据处理。 光束尺寸:10(水平)×15(垂直) µm² 对该低温环完成二维光栅扫描后,HITO可分别针对完整旋转螺旋数据收集模式检测到1个晶体、针对部分螺旋模式检测到7个晶体,以及针对多小楔角模式检测到62个晶体。完整旋转螺旋、部分螺旋与小楔角数据集的总振荡角度分别为60°、40°与5°。 该晶体所属空间群为P4₃2₁2,平均晶胞参数为a=b=79.1,c=37.5。 在已发表的研究成果(Hirata等,待发表)中,使用KAMO软件将数据处理至1.50 Å分辨率。 <em><strong>【可用数据集】</strong></em> # 光束线: SPring-8 BL32XU # 波长: 0.9000 Å # 探测器: EIGER X 9M # ZOO模式: 混合模式(HITO) ##################################################### # 多小楔角数据集 # 'CPS1991-05-multi_master.h5' 管理62个数据集 ##################################################### # 5.0 deg. / 数据集 # 0.1 deg. / 帧 # 50 帧 / 数据集 # 100 帧 / 每个数据文件 ##################################################### hito-CPS1991-05//data/CPS1991-05-multi_data_000001.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000002.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000003.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000004.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000005.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000006.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000007.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000008.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000009.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000010.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000011.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000012.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000013.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000014.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000015.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000016.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000017.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000018.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000019.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000020.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000021.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000022.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000023.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000024.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000025.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000026.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000027.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000028.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000029.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000030.h5 hito-CPS1991-05//data/CPS1991-05-multi_data_000031.h5 hito-CPS1991-05//data/CPS1991-05-multi_master.h5 ##################################################### # 'cry-00-??_master.h5' 对应「部分螺旋」数据集 ##################################################### # 40.0 deg. / 数据集 # 0.1 deg. / 帧 # 400 帧 / 数据集 # 100 帧 / 每个数据文件 ##################################################### hito-CPS1991-05//data/cry-00-00_data_000001.h5 hito-CPS1991-05//data/cry-00-00_data_000002.h5 hito-CPS1991-05//data/cry-00-00_data_000003.h5 hito-CPS1991-05//data/cry-00-00_data_000004.h5 hito-CPS1991-05//data/cry-00-00_master.h5 hito-CPS1991-05//data/cry-00-01_data_000001.h5 hito-CPS1991-05//data/cry-00-01_data_000002.h5 hito-CPS1991-05//data/cry-00-01_data_000003.h5 hito-CPS1991-05//data/cry-00-01_data_000004.h5 hito-CPS1991-05//data/cry-00-01_master.h5 hito-CPS1991-05//data/cry-00-02_data_000001.h5 hito-CPS1991-05//data/cry-00-02_data_000002.h5 hito-CPS1991-05//data/cry-00-02_data_000003.h5 hito-CPS1991-05//data/cry-00-02_data_000004.h5 hito-CPS1991-05//data/cry-00-02_master.h5 hito-CPS1991-05//data/cry-00-03_data_000001.h5 hito-CPS1991-05//data/cry-00-03_data_000002.h5 hito-CPS1991-05//data/cry-00-03_data_000003.h5 hito-CPS1991-05//data/cry-00-03_data_000004.h5 hito-CPS1991-05//data/cry-00-03_master.h5 hito-CPS1991-05//data/cry-00-04_data_000001.h5 hito-CPS1991-05//data/cry-00-04_data_000002.h5 hito-CPS1991-05//data/cry-00-04_data_000003.h5 hito-CPS1991-05//data/cry-00-04_data_000004.h5 hito-CPS1991-05//data/cry-00-04_master.h5 hito-CPS1991-05//data/cry-00-05_data_000001.h5 hito-CPS1991-05//data/cry-00-05_data_000002.h5 hito-CPS1991-05//data/cry-00-05_data_000003.h5 hito-CPS1991-05//data/cry-00-05_data_000004.h5 hito-CPS1991-05//data/cry-00-05_master.h5 hito-CPS1991-05//data/cry-00-06_data_000001.h5 hito-CPS1991-05//data/cry-00-06_data_000002.h5 hito-CPS1991-05//data/cry-00-06_data_000003.h5 hito-CPS1991-05//data/cry-00-06_data_000004.h5 hito-CPS1991-05//data/cry-00-06_master.h5 ##################################################### # 'cry-01-??_master.h5' 对应「完整旋转螺旋」数据集 ##################################################### # 60.0 deg. / 数据集 # 0.1 deg. / 帧 # 600 帧 / 数据集 # 100 帧 / 每个数据文件 # ** 本程序可采集「完整旋转」螺旋数据集,但本次演示中设置为60°总振荡角度。 ##################################################### hito-CPS1991-05//data/cry-01-00_data_000001.h5 hito-CPS1991-05//data/cry-01-00_data_000002.h5 hito-CPS1991-05//data/cry-01-00_data_000003.h5 hito-CPS1991-05//data/cry-01-00_data_000004.h5 hito-CPS1991-05//data/cry-01-00_data_000005.h5 hito-CPS1991-05//data/cry-01-00_data_000006.h5 hito-CPS1991-05//data/cry-01-00_master.h5

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创建时间:
2019-01-07
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