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The exome capture samples are from hybrids between each accession from our panel and Morex. We have pre-existing exome capture and/or whole-genome shotgun data for all of the parents, but wanted DNA information from the hybrids in order to verify SNPs between parental DNA and RNA-seq samples. The sample names include a number and the accession name. All hybrids are between the named accession and Morex. DNA was harvested from 1-week old seedling tissue using the Qiagen DNeasy kit. DNA enriched using the barley exome capture platform was sequenced using 100 bp paired-end Illumina Hi-Seq sequencing. The Contribution of Cis- And Trans-Acting Variants to Gene Regulation in Wild and Domesticated Barley Under Cold Stress and Control Conditions

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NIAID Data Ecosystem2026-03-11 收录
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https://www.ncbi.nlm.nih.gov/bioproject/PRJEB29973
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The exome capture samples are from hybrids between each accession from our panel and Morex. We have pre-existing exome capture and/or whole-genome shotgun data for all of the parents, but wanted DNA information from the hybrids in order to verify SNPs between parental DNA and RNA-seq samples. The sample names include a number and the accession name. All hybrids are between the named accession and Morex. DNA was harvested from 1-week old seedling tissue using the Qiagen DNeasy kit. DNA enriched using the barley exome capture platform was sequenced using 100 bp paired-end Illumina Hi-Seq sequencing

本研究的外显子组捕获样本,均来自本研究材料组中每份种质材料(accession)与大麦品种Morex的杂交后代。我们已获取所有亲本的外显子组捕获(exome capture)和/或全基因组鸟枪法测序(whole-genome shotgun)数据,但为验证亲本DNA与RNA测序(RNA-seq)样本间的单核苷酸多态性(Single Nucleotide Polymorphisms,简称SNPs),仍需获取杂交后代的DNA信息。样本名称由数字与对应种质材料名称组合而成,所有杂交后代均为该命名种质材料与Morex的杂交子代。本实验采用凯杰(Qiagen)DNeasy试剂盒,从1周龄幼苗组织中提取基因组DNA;利用大麦外显子组捕获平台对DNA进行富集后,采用100 bp双端测序策略,通过Illumina HiSeq测序平台完成测序。
创建时间:
2020-06-16
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