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Genomic data of Nanmaohu Park vascular plant specimen, RL0570

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DataCite Commons2025-05-26 更新2025-04-15 收录
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http://gigadb.org/dataset/101633
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001717. Preliminary identification is that it is of the family Lamiaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 316114000bp. We have generated 69760000000bp of data, which gives a theoretical coverage of 220.7x.

本研究于中国云南瑞丽植物园开展维管植物(vascular plants)取样工作。所有样本采集于经度97.646389°至98.099167°、纬度23.878333°至24.155556°的区域内,海拔范围为740米至1200米(海平面以上)。本次共采集1093份维管植物样本,选取每份样本的幼叶进行测序,同时制作对应凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank,简称HCNGB)。其中760份样本成功提取到可用于测序的基因组DNA,剩余333份样本仅完成凭证标本制作,相关植物的影像资料已收录于本数据集。上述760份样本涵盖隶属于48个目、135个科的约696种维管植物。目前仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数标本被鉴定至科级以上分类阶元。本数据集包含编号为HCNGB:RUILI:HCNGB_00001717的凭证标本对应的基因组测序数据与植物影像资料。经初步分类鉴定,该标本隶属于唇形科(Lamiaceae)。通过测序所得的K-mer(K-mer)分布分析,预测该样本的基因组大小为316114000bp。本研究共生成69760000000bp的测序数据,理论测序覆盖度可达220.7×。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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