Additional file 1 of Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.)

Additional file 1: Figure S1. Schematic representation of the exon-intron distribution of SlAlba gene family. Figure S2. Schematic representation of 15 conserved motifs in Alba proteins from tomato, Arabidopsis, and rice as predicted by Multiple Em for Motif Elicitation (MEME) web server. Figure S3. Chromosome distribution of tomato Alba genes. Figure S4. Gene duplication investigation of Alba genes in the tomato genome. Figure S5. Putative cis-acting elements in the upstream of SlAlba genes. Figure S6. The predicted binding of putative patterner ligands to SlAlba proteins. Figure S7. Overview of conserved motifs of Alba proteins from tomato, Arabidopsis and rice determined using MEME web tool. Figure S8. The top 30 enriched GO terms of co-expressed genes with 6 SlAlba genes. Table S1. List of the Alba amino acid sequences used for phylogenetic investigation. Table S2. The primer sequences used for subcellular localization analysis. Table S3. The primer sequences of SlAlba genes used for qRT-PCR analysis. Table S4. Sequence identity among 8 tomato Alba proteins. Table S5. List of cis-elements in the promoter regions tomato Alba genes. Table S6. Prediction of miRNA target sequences in tomato Alba genes. Table S7. Templates used for 3D structure modelling of SlAlba proteins. Table S8. Secondary structural components in SlAlba proteins. Table S9. Secondary structure prediction for SlAlba proteins by I-TASSER. Table S10. Parameters for 3D structure modelling of SlAlba proteins. Table S11. Subcellular localization of SlAlba proteins predicted by in silico analysis. Table S12. Gene Ontology (GO) annotation for SlAlba proteins. Table S13. Annotated pathways of co-expressed genes. Table S14. Information of samples used for RNA seq analysis.

附加文件1：图S1。SlAlba基因家族的外显子-内含子分布示意图。图S2。采用基序发现多重期望最大化（Multiple Em for Motif Elicitation, MEME）在线服务器预测的番茄、拟南芥与水稻Alba蛋白的15个保守基序示意图。图S3。番茄Alba基因的染色体分布情况。图S4。番茄基因组内Alba基因的基因重复事件分析。图S5。SlAlba基因上游区域的潜在顺式作用元件。图S6。潜在模式配体与SlAlba蛋白的预测结合情况。图S7。采用MEME在线工具分析得到的番茄、拟南芥与水稻Alba蛋白的保守基序概览。图S8。与6个SlAlba基因共表达的基因的前30个富集Gene Ontology（GO）条目。表S1。用于系统发育分析的Alba氨基酸序列列表。表S2。用于亚细胞定位分析的引物序列。表S3。用于qRT-PCR分析的SlAlba基因引物序列。表S4。8个番茄Alba蛋白的序列一致性。表S5。番茄Alba基因启动子区域的顺式作用元件列表。表S6。番茄Alba基因中miRNA靶序列的预测结果。表S7。SlAlba蛋白三维结构建模所用的模板。表S8。SlAlba蛋白的二级结构组成。表S9。采用I-TASSER预测的SlAlba蛋白二级结构。表S10。SlAlba蛋白三维结构建模的参数。表S11。通过in silico分析预测的SlAlba蛋白亚细胞定位结果。表S12。SlAlba蛋白的Gene Ontology（GO）注释信息。表S13。共表达基因的注释通路信息。表S14。RNA-seq分析所用的样本信息。