遇见数据集

Supplementary processed data for Chandler et al. Single-cell transcriptomics identifies aberrant glomerular angiogenic signalling in the early stages of a murine model of WT1 kidney disease

收藏
Zenodo2023-01-24 更新2026-05-26 收录
数据链接:
官方服务:

资源简介:

<strong><em>Summary datafiles for Chandler et al.</em></strong> Processed single-cell RNA sequencing data, derived from murine glomeruli (isolated using the dynabead technique) from <em>n = 2</em> wild-type <em>Wt1<sup>+/+</sup></em> (Ctrl) and <em>n = 2</em> mutant <em>Wt1<sup>R394W/+</sup></em> (Mut) littermates of WT1 glomerulopathy, followed by 10x Genomics Chromium v3 platform. Please refer to associated scripts for analysis of the data: https://github.com/daniyal-jafree1995/collaborations/blob/main/Chandleretal_2022_WT1glomerulopathyscRNAseq.R File descriptions as below: barcodes.tsv.gz - barcodes file required for input to Read10X function in Seurat features.tsv.gz - features file required for input to Read10X function in Seurat matrix.mtx.gz - matrix file required for input to Read10X function in Seurat WT1_scRNAseq.rds - RDS file containing processed and annotated Seurat object for downstream analysis

*Chandler等人研究相关汇总数据集文件* 本数据集包含经处理的单细胞RNA测序(single-cell RNA sequencing)数据,样本来源于采用磁珠分选技术(dynabead)分离得到的小鼠肾小球,取自2只野生型*Wt1<sup>+/+</sup>*(对照组,Ctrl)与2只突变型*Wt1<sup>R394W/+</sup>*(突变组,Mut)的WT1肾小球病同窝仔鼠,后续采用10x Genomics Chromium v3平台完成测序。数据分析所用配套脚本可参见:https://github.com/daniyal-jafree1995/collaborations/blob/main/Chandleretal_2022_WT1glomerulopathyscRNAseq.R 文件说明如下: 1. `barcodes.tsv.gz`:Seurat工具`Read10X`函数输入所需的条形码文件 2. `features.tsv.gz`:Seurat工具`Read10X`函数输入所需的特征文件 3. `matrix.mtx.gz`:Seurat工具`Read10X`函数输入所需的矩阵文件 4. `WT1_scRNAseq.rds`:包含已完成处理与注释的Seurat对象的RDS文件,可用于下游分析

提供机构:
Zenodo
创建时间:
2023-01-24
二维码
社区交流群
二维码
科研交流群
商业服务