Anvi'o pangenomic workflow tutorial

While multiple bioinformatics software are already available to generate and/or visualize pangenomes, interfaces do not necessary offer flexible analysis performances, limiting the user's capabilities interacting with their data. We recently have introduced a software platform, anvi'o, to bridge some of the gaps in our common bioinformatics toolkit. We are happy to announce that anvi'o can now process, visualize and manipulate pangenomic data in a user-friendly environment. Some modules are still under construction for a fully automatized workflow. Nevertheless, the current anvi'o interface already offers novel opportunities to combine pangenomes with a variety of contextual metadata and exports high-quality figures for publications. This blog describes original pangenomic investigations of publically available genomic collections. It is set to introduce the anvi'o pangenomic workflow to our enthusiastic users community.

尽管目前已有多款可用于生成和/或可视化泛基因组（pangenome）的生物信息学软件，但其界面往往难以提供灵活的分析性能，限制了用户与自身数据交互的能力。我们近期推出了一款名为anvi'o的软件平台，旨在填补现有通用生物信息学工具集的部分空白。我们很高兴地宣布，anvi'o现已可在用户友好的操作环境中处理、可视化并操作泛基因组数据。部分用于实现全自动化工作流的模块仍在开发中。尽管如此，当前的anvi'o界面已提供了全新的可能性，可将泛基因组与各类上下文元数据相结合，并可导出用于学术发表的高质量图表。本博客介绍了对公开可用基因组数据集的原创泛基因组学研究，旨在向我们热情的用户社区介绍anvi'o的泛基因组学工作流。