Additional file 6 of Uncovering the architecture of production-driven introgression in Cinisara cattle breed

Additional file 6. Table S1-List of introgressed SNPs identified in the Cinisara cattle breed. For each SNP, the following information is given: the bovine chromosome, the position of the SNP, the flanking region, the proportion of introgression given by each reference population and the target population. Table S2-List of introgressed SNPs identified in the Cinisara cattle breed. For each SNP, the following information is given: the bovine chromosome, the position of the SNP, the flanking region, the proportion of introgression given by each reference population and the target population. Table S3 - Mean FROH, average individual introgression from HOL and BRW as calculated with lai analysis, and mean total length of IBD sharing with HOL and BRW of CIN_A and CIN_B individuals. Table S4 - List of introgressed SNPs identified in the 99th percentile in the Cinisaracattle breed. For each SNP, the following information is given: the bovine chromosome, the position of the SNP, the flanking region, the proportion of introgression given by each reference population and target population. Table S5 - List of genes located on highly introgressed SNP of Cinisara Ausing Holstein as reference population. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given. Table S6 - List of genes located on the highly introgressed SNP of Cinisara Ausing Brown Swiss as reference population. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given. Table S7 - List of the highly introgressed SNP identified in CIN_A using Holstein as reference population located on the quantitative traits loci. The chromosome and start and end position of SNPs, the chromosome, start and end position and the description of QTL are given. Table S8 - List of the highly introgressed SNP identified in CIN_A using Brown Swiss as reference population located on the quantitative traits loci. The chromosome and start and end position of SNPs, the chromosome, start and end position and the description of QTL are given. Table S9 - List of introgressed SNPs identified in the 99th percentile in the Cinisaracattle breed. For each SNP, the following information is given: the bovine chromosome, the position of the SNP, the flanking region, the proportion of introgression given by each reference population and target population. Table S10 - List of genes located on the candidate regions of Cinisara Ausing Holstein as reference population. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given. Table S11 - List of genes located on the candidate regions of Cinisara Ausing Brown Swiss as reference population. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given. Table S12 - List of the highly introgressed SNP identified in CIN_B using Holstein as reference population located on the quantitative traits loci. The chromosome and start and end position of SNPs, the chromosome, start and end position and the description of QTL are given. Table S13 - List of the highly introgressed SNP identified in CIN_B using Brown Swiss as reference population located on the quantitative traits loci. The chromosome and start and end position of SNPs, the chromosome, start and end position and the description of QTL are given. Table S14 - List of genes in common between CIN_A and CIN_B in the highly introgressive SNPs from HOL. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given. Table S15 - List of genes in common between CIN_A and CIN_B in the highly introgressive SNPs from BRW. The bovine chromosomeon which the SNP and genes are located, the positionsfor SNP start and SNP end, the positionsfor gene start and gene end and the gene names are given.