Additional file 2 of Four myriapod relatives – but who are sisters? No end to debates on relationships among the four major myriapod subgroups

Additional file 2: Table S1. Taxon sampling and accession numbers of raw and assembled transcriptome data of species included in this study. Table S2. Collection information. Table S3. Assembly statistics of published transcriptome data de novo assembled. Table S4. Contamination and assembly statistics of de novo assembled transcriptome data newly sequenced for this study. Table S5. Information and source of the reference species included in the ortholog set. Table S6. Orthograph statistics. Table S7. Group definitions to compile the data sets RELAXEDaa and RELAXEDnt (2nd codon positions). Table S8. Supermatrix diagnostics of final data sets compared with those analysed by Fernandez et al., 2018. Table S9. Overview of statistical bootstrap and transfer bootstrap support of selected clades. Table S10. Group definitions used for Four-cluster Likelihood Mapping (FcLM) analyses. Table S11. FcLM results testing the position of Myriapoda within Euarthropoda (Mandibulata versus Paradoxopoda). Table S12. Outgroup dependence: FcLM results testing myriapod relationships with Chelicerata and Onychophora as outgroup (data set STRICTaa_ChO). Table S13. Outgroup dependence: FcLM results testing myriapod relationships with Pancrustacea as outgroup (data set STRICTaa_Pan). Table S14. Amino acid and nucleotide frequencies of included species in data sets STRICTaa and STRICTnt.

补充文件2：表S1。本研究纳入物种的原始转录组与组装后转录组数据的类群采样信息及登录号。
表S2。采样信息。
表S3。已发表的从头组装转录组数据的组装统计信息。
表S4。本研究新测序的从头组装转录组数据的污染情况与组装统计信息。
表S5。直系同源基因集（ortholog set）中纳入的参考物种的相关信息及来源。
表S6。Orthograph统计信息。
表S7。用于构建RELAXEDaa与RELAXEDnt（密码子第2位点）数据集的类群分组定义。
表S8。本研究最终数据集与Fernandez等人2018年分析所用数据集的超级矩阵（supermatrix）诊断结果对比。
表S9。选定支系（clade）的统计自举（bootstrap）与转移自举支持率概况。
表S10。四支系似然映射（Four-cluster Likelihood Mapping, FcLM）分析所用的类群分组定义。
表S11。验证多足类（Myriapoda）在真节肢动物门（Euarthropoda）中系统位置的FcLM分析结果（比较有颚类（Mandibulata）与悖论类（Paradoxopoda）两种假说）。
表S12。外类群依赖性分析：以螯肢亚门（Chelicerata）和有爪动物门（Onychophora）为外类群时，验证多足类系统关系的FcLM分析结果（数据集STRICTaa_ChO）。
表S13。外类群依赖性分析：以泛甲壳动物类（Pancrustacea）为外类群时，验证多足类系统关系的FcLM分析结果（数据集STRICTaa_Pan）。
表S14。STRICTaa与STRICTnt数据集中纳入物种的氨基酸与核苷酸频率信息。