scATAC-seq of Inguinal Adipose Tissue of UCP1-KO and WT mice.
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174456
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Single cell level analysis of transcriptional circuits regulating UCP1-indepednent theremogensis through Lgr6 in inguinal Adipose tissue. We previously identified an increase in Lgr6 gene expression in the beige adipocyte population of UCP1-KO mice and hypothesized its involvement in UCP1-independent thermogensis. Consistent with our previous data the scATAC-seq data reveals that chromatin accessibility at the Lgr6 loci is significantly higher in Ucp1- KO beige adipocytes as compared to WT and the promter is also more accessible in Ucp1- KO beige adipocytes. Other DNA-binding motifs involved in UCP-1 indepedent thermogensis were also analyzed and found to be upregulated in the KO model. Comaparison of UCP1-KO and WT mice under cold exposure.
本研究针对腹股沟脂肪组织中通过Lgr6调控不依赖解偶联蛋白1(UCP1)的产热的转录环路开展单细胞水平分析。我们此前已在UCP1敲除(UCP1-KO)小鼠的米色脂肪细胞(beige adipocyte)群中检测到Lgr6基因表达上调,并推测其参与不依赖UCP1的产热过程。本研究的单细胞转座酶可及性测序(scATAC-seq)数据与此前的研究结果一致:相较于野生型(Wild Type,WT)小鼠,UCP1敲除米色脂肪细胞中Lgr6基因位点的染色质可及性显著升高,其启动子区域的染色质可及性同样更高。此外,本研究还对参与不依赖UCP1产热过程的其他DNA结合基序进行了分析,结果显示其在敲除模型中表达上调。本研究还开展了寒冷暴露条件下UCP1敲除与野生型小鼠的对照分析。
创建时间:
2021-05-16



