Variant calling in the Goldilocks Zone: how reference genome choice and read mapping stringency impact heterozygosity estimates and phylogenetic analyses

This archive includes a short read dataset mapped to different references
using different mapping methods, the scripts and summary statistics for
evaluating the efficiency and accuracy of mapping, the heterozygosity, and
tree topology resulting from each reference and method.

本归档文件包含如下内容：经多种比对方法（mapping methods）映射至不同参考序列的短读长数据集（short read dataset）；用于评估比对效率与准确性的脚本及汇总统计量；以及针对每种参考序列及比对方法所得到的杂合度与系统发育树拓扑结构（tree topology）。