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Genomic data of Nanmaohu Park vascular plant specimen, RL0808

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DataCite Commons2025-05-26 更新2026-05-03 收录
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http://gigadb.org/dataset/101871
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001693. Preliminary identification is that it is of the family Fabaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 368757000bp. We have generated 70520000000bp of data, which gives a theoretical coverage of 191.2x.

本研究于中国云南省瑞丽植物园采集维管植物样本。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围为740米至1200米(以海平面为基准)。本研究共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作了凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank,HCNGB)。 其中761份标本可提取到符合测序要求的DNA。剩余332份样本仅制作了凭证标本,其对应植株的影像资料已收录于本数据集。本次测序的761份样本隶属于49个目、137个科,共计689个维管植物物种。 目前研究团队仍在对所有标本进行正式分类鉴定,但截至论文发表时,仅有极少数标本可鉴定到科以上的分类阶元。 本数据集包含编号为HCNGB:RUILI:HCNGB_00001693的凭证标本对应的基因组测序数据及植株影像资料。经初步鉴定,该样本隶属于豆科(Fabaceae)。 通过测序数据的K-mer分布分析,预测该样本的基因组大小为368757000碱基对(bp)。本次共生成70520000000碱基对的测序数据,理论测序覆盖度达191.2倍。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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