SILVA database - all extracted bacterial and archaeal taxa (unfiltered)

As a first attempt to target microbially related data in the ODIS graph, we extracted all the child clauses of bacterial and archaeal taxa from the SILVA database , that is all headers from the sequences of both domains of life. We saved this dataset in form of a textfile and curated the headers as follows: The species name's epithet was removed, and any duplicate generic names were eliminated. We removed non-alphabetic characters from the list, such as /*-_ and numbers Additionally, we excluded names shorter than four characters and those containing more than two consecutive identical letters. Even after organizing the dataset, there were still some taxonomic names that were not specific to microbes. These names might have been used as acronyms for specific categories (e.g. "unio" for "uniola" or "unionicola"), as species identifiers like "urhd," or as part of the species name, such as "blood," "texas," or even created purely for creative purposes by the namegiver, such as "unicorn."作为针对ODIS图谱(ODIS Graph)中微生物相关数据的首次尝试，我们从SILVA数据库(SILVA Database)中提取了细菌与古菌分类单元的所有子分类项，即两个生命域序列的全部标题。我们将该数据集以文本文件格式存储，并对序列标题进行了如下规范化处理： 移除了物种名称中的种加词，并剔除了所有重复的属名。 我们移除了列表中的非字母字符，包括/*-_及各类数字。 此外，我们还排除了长度少于4个字符，以及包含连续两个以上相同字母的名称。 即便完成了数据集的整理工作，仍有部分分类学名称并非微生物专属。这类名称可能被用作特定类别的缩写（例如以"unio"指代"uniola"或"unionicola"）、作为物种标识符如"urhd"，或是作为物种名称的组成部分，例如"blood"、"texas"，甚至是命名者出于创意目的杜撰的名称，如"unicorn"。