Additional file 1 of Genetic changes involving the coral gastrovascular system support the transition between colonies and bailed-out polyps: evidence from a Pocillopora acuta transcriptome

Additional file 1. DEGs between bailed-out polyps and colonies. Result of a DE analysis between bailed-out polyps (N = 9) and normal colonies (N = 9) under ambient conditions. Transcripts are presented as transcriptID^annotation. P-values and FDR for expression differences between the two groups are presented for each transcript. Expression levels are presented as TPM after trimmed mean of M values (TMM) cross-sample normalization. RNAseq libraries are presented as treatment (Hyperthermal/Hyper-illumination/Hyposalinity)_coral morphotype (Colony/Polyp)_biological replicate (rep1/rep2/rep3).

附加文件1. 脱离菌落的珊瑚息肉与正常珊瑚菌落间的差异表达基因（Differentially Expressed Genes, DEGs）分析结果。本文件包含环境条件下，脱离菌落的珊瑚息肉（样本量N=9）与正常珊瑚菌落（样本量N=9）之间的差异表达分析结果。转录本以transcriptID^annotation的格式展示。针对每一条转录本，均提供了两组间表达差异的P值与错误发现率（False Discovery Rate, FDR）。表达水平以经M值截尾均值（Trimmed Mean of M values, TMM）完成跨样本归一化后的每百万转录本（Transcripts Per Million, TPM）数值呈现。RNA测序（RNA sequencing, RNA-seq）文库的命名格式为：处理组(高温（Hyperthermal）/高光（Hyper-illumination）/低渗（Hyposalinity）)_珊瑚形态型(菌落（Colony）/息肉（Polyp）)_生物学重复(rep1/rep2/rep3)