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Data from: Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects

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Mendeley Data2024-06-25 更新2024-06-29 收录
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https://datadryad.org/stash/dataset/doi:10.5061/dryad.f4r38
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Amino acid alignments of insect insulator proteinsThis archive contains amino acid alignments of all insect insulator proteins found in the 1KITE transcriptome data and the sequences that were used, to infer profile Hidden Markov Models for this search. The alignments are in the .fasta file format.insulator_proteins_amino_acid_alignments.tar.gzGene trees of insect insulator proteinsThis archive contains all gene trees inferred from amino acid alignments of insulator protein sequences that were found in the 1KITE transcriptome data. The gene trees are in the .newick file format.insulator_proteins_gene_trees.tar.gzNucleotide alignments of insect insulator proteinsThis archive contains all nucleotide alignments of insect insulator protein sequences found in the 1KITE project. These alignments have been used to infer dN/dS ratios as markers for positive or negative selection in these sequences. The alignments are in the .fasta file format.insulator_proteins_nucleotide_alignments.tar.gz

昆虫绝缘子蛋白的氨基酸序列比对 本归档文件包含从1KITE转录组数据中筛选得到的全部昆虫绝缘子蛋白(insulator proteins)的氨基酸序列比对结果,以及本次搜索用于推导剖面隐马尔可夫模型(profile Hidden Markov Models)所用的序列。该序列比对文件采用FASTA格式存储。归档文件名为:insulator_proteins_amino_acid_alignments.tar.gz 昆虫绝缘子蛋白的基因树 本归档文件包含所有从1KITE转录组数据中发现的绝缘子蛋白序列的氨基酸序列比对结果推导得到的基因树。该基因树文件采用Newick格式存储。归档文件名为:insulator_proteins_gene_trees.tar.gz 昆虫绝缘子蛋白的核苷酸序列比对 本归档文件包含1KITE项目中发现的全部昆虫绝缘子蛋白序列的核苷酸序列比对结果。此类比对结果曾被用于推导dN/dS比值,以作为这些序列中正选择或负选择的标记。该序列比对文件采用FASTA格式存储。归档文件名为:insulator_proteins_nucleotide_alignments.tar.gz
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2023-06-28
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