Data and code associated to the manuscript: "The Octocoral Trait Database: a global database of trait information for octocoral species"
收藏资源简介:
The ZIP file contains structured data and code to create all figures from the manuscript: “The Octocoral Trait Database: a global database of trait information for octocoral species”. The folder contains the following files: · Code.R – This is the annotated code used to create all figures in R. (v R studio; 2023.06.0+421) · database.csv – This is the first data realase of the octocoral trait database, used to create all figures of the manuscript. · sp_id.csv – This is a file containing the list of accepted octocoral species contained in the database · iqtree.tre – This is a tree object used to create a family-resolved tree of octocorals. It has been downloaded from McFadden et al. 2022. Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics · MEOW – A folder containing regional information from Spalding et al. 2007. Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas · Provinces_coord.csv: A file containing the coordinates of marine provinces, also derived from Spalding et al. 2007
该压缩包包含用于复现论文《八放珊瑚性状数据库(Octocoral Trait Database):全球八放珊瑚物种性状信息数据库》中所有图表的结构化数据与代码。 该文件夹包含以下文件: · Code.R:用于生成论文中全部图表的带注释R代码(适配R Studio 2023.06.0+421版本) · database.csv:八放珊瑚性状数据库的首个公开数据版本,用于生成论文中的所有图表 · sp_id.csv:收录本数据库所包含全部有效八放珊瑚物种名录的文件 · iqtree.tre:用于构建八放珊瑚科阶元系统发育树的树文件,数据源自McFadden等2022年发表的《基于系统发育组学的八放珊瑚亚纲(刺胞动物门:珊瑚虫纲)修订系统学》 · MEOW:存储Spalding等2007年发表的《世界海洋生态区:近岸与陆架区域的生物区域划分》中区域信息的文件夹 · Provinces_coord.csv:同样源自Spalding等2007年研究的海洋生物地理省份坐标文件



