Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution

The code, dataset and result of paper Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution. Analysis_Co_TF_Code.zip include python code used in our experiment. Analysis_Co_TF_Dataset.zip include the 13 ChIP-seq datasets and TRANSFAC motifs. Mouse Genome data can be accessed from http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/Analysis_Co_TF_Result.zip is the result of our method on the 13 ChIP-seq datasets.论文《基于基序分布有序邻域差异的共关联转录因子分析》（Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution）的配套代码、数据集与实验结果说明如下：Analysis_Co_TF_Code.zip 包含本实验所用的Python代码；Analysis_Co_TF_Dataset.zip 包含13组染色质免疫共沉淀测序（ChIP-seq）数据集以及TRANSFAC基序（TRANSFAC motifs）；小鼠基因组数据可从 http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/ 获取；Analysis_Co_TF_Result.zip 为本研究方法在上述13组ChIP-seq数据集上的运行结果。