Additional file 3: of Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing

Table S3. A list of single nucleotide polymorphisms (SNPs) in avocado transcriptome. Header descriptions: Contig – mRNA contig ID; Position – SNP position; Ref allele – Allele call on the reference contig; Alt allele – Allele call which is different from the reference allele; Guatemalan coverage – Reads’ depth of the Guatemalan pool sequencing; Guatemalan alt prop – proportion of the alternative allele; Mexican coverage – Reads’ depth of the Mexican pool sequencing; Mexican coverage – Reads’ depth of the Mexican pool sequencing; WestIndian coverage – Reads’ depth of the WestIndian pool sequencing; WestIndian alt prop – proportion of the alternative allele; Guatemalan – Guatemalan polymorphism call; Mexican – Mexican polymorphism call; WestIndian – WestIndian polymorphism call; Contig sequence – Sequence of the contig; Polymorphism call description: AA – homozygous to reference allele; BB – homozygous to alternative allele; AB - heterozygous (XLSX 50424 kb)

表S3 鳄梨转录组中单核苷酸多态性（single nucleotide polymorphisms, SNPs）列表。表头说明如下：Contig：mRNA重叠群编号；Position：SNP位点位置；Ref allele：参考重叠群上的参考等位基因分型；Alt allele：与参考等位基因存在差异的变异等位基因分型；Guatemalan coverage：危地马拉混样测序的测序读段深度；Guatemalan alt prop：变异等位基因所占比例；Mexican coverage：墨西哥混样测序的测序读段深度；Mexican coverage：墨西哥混样测序的测序读段深度；WestIndian coverage：西印度混样测序的测序读段深度；WestIndian alt prop：变异等位基因所占比例；Guatemalan：危地马拉群体多态性分型；Mexican：墨西哥群体多态性分型；WestIndian：西印度群体多态性分型；Contig sequence：重叠群序列；多态性分型说明：AA为参考等位基因纯合；BB为变异等位基因纯合；AB为杂合（XLSX 50424 kb）