Additional file 3 of Phytochrome-mediated shade avoidance responses impact the structure and composition of the bacterial phyllosphere microbiome of Arabidopsis

Supplementary Material 3: Additional file 3. Euclidean clustering of the log10 relative abundances of the 141 core bacterial phyllospheric genera present in all samples, showing genus names. Taxa were classified using the SILVA database (v.138) and mothur (v.1.48.0) [60]; Quast et al., [51] from bacterial 16 S rRNA sequences present in the phyllosphere microbiomes of wild type (WT) and phyB mutant plants (phyB) either maintained in white light (W) or transferred to simulated shade (W + FR) (n = 3 for all samples).

补充材料3：附加文件3。本文件针对所有样本中存在的141个核心叶围细菌属的经log₁₀转换的相对丰度开展欧式聚类分析，并标注各属的名称。分类群注释基于提取自野生型（WT）与phyB突变体植株（phyB）叶围微生物组的细菌16S rRNA序列完成，这些植株分别被维持在白光（W）环境或转移至模拟遮阴（W+FR）环境，所有样本的生物学重复数均为3。本分析采用SILVA数据库（v.138）与mothur（v.1.48.0）工具完成[60]，相关方法源自Quast等[51]的研究。