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MassiveFold data for target H1236 - T292

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Recherche Data Gouv France2025-01-01 更新2026-04-09 收录
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https://entrepot.recherche.data.gouv.fr/citation?persistentId=doi:10.57745/BQHJAQ
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MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.

本数据集为与CAPRI合作针对CASP16生成的MassiveFold数据。针对参数组合为1005×8的靶标,共生成8040条预测结果。相关实验设置说明可参阅`MassiveFold_CASP16_Abstract.pdf`;`README.txt`对主压缩包`MassiveFold.tar.gz`的内容进行了详细说明。主压缩包`MassiveFold.tar.gz`包含全部预测结果,按实验条件分为8个以条件名称命名的文件夹,其中涵盖预测结果文件、pickle文件、序列比对文件、排名文件及绘图结果。`only_pdbs_MassiveFold.tar.gz`为`gather_runs.py`脚本的输出产物,剔除了pickle文件,仅包含所有PDB文件及带评分的排名文件。`gather_runs.py`脚本可用于整合预测运行结果,相较于主压缩包`MassiveFold.tar.gz`中附带的旧版本脚本,该脚本已完成更新,推荐优先使用。`combined_scores.csv`文件包含该靶标的CASP评估结果(数据来源:https://predictioncenter.org/);`CAPRI_assessment.csv`文件包含该靶标的CAPRI评估结果(数据来源:https://www.capri-docking.org/assessment/);`CAPRI_scoring.pdb.gz`为多PDB压缩包,包含该靶标的全部MassiveFold预测结果,曾用于CAPRI评分环节。
创建时间:
2025-01-01
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