Assembly and annotation of the genome of a lipid accumulator strain (LAS) obtained from the biolistic genetic transformation of Aurantiochytrium limacinum strain CCAP_4062/1
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资源简介:
The deposited files include the genome sequence and annotation of an Aurantiochytrium limacinum strain CCAP_4062/1 obtained by biolistic genetic transformation called LAS (Lipid Accumulator Strain).
The following files are available:
- LAS_Assembly.fasta = Genome assembly obtained with Pacbio Sequel I long reads
- Augustus_Annotation_model_LAS.gtf = GTF file containing the gene models obtained with Augustus
- LAS_Gene_Descriptions.txt = gene descriptions obtained from the predicted proteome using the Pannzer2 Pipeline
- LAS_GO_Annotation.txt = Gene Ontology Annotation obtained from the predicted proteome using the Pannzer2 Pipeline
本数据集所提交的文件包含一株通过基因枪介导遗传转化获得的柠檬色橘囊藻(Aurantiochytrium limacinum)CCAP_4062/1菌株的基因组序列与注释信息,该菌株命名为LAS(脂质积累菌株,Lipid Accumulator Strain)。本次可获取的文件如下:
- LAS_Assembly.fasta:基于PacBio Sequel I长读长测序数据组装获得的基因组组装序列文件
- Augustus_Annotation_model_LAS.gtf:借助Augustus基因预测软件得到的基因模型GTF格式文件
- LAS_Gene_Descriptions.txt:利用Pannzer2分析流程对预测蛋白质组进行注释所得的基因描述文件
- LAS_GO_Annotation.txt:利用Pannzer2分析流程对预测蛋白质组进行注释所得的基因本体(Gene Ontology,GO)注释文件
创建时间:
2021-07-27



