Additional file 2 of Mosaic environment-driven evolution of the deep-sea mussel Gigantidas platifrons bacterial endosymbiont

Additional file 2: Supplementary Table 1. Information of Gigantidas platifrons samples used in metagenomic analysis and summary of sequencing data. Supplementary Table 2. Test datasets created from E. coli strain genomes. Supplementary Table 3. Summary of the assembled bins obtained by different binning methods using the E. coli test datasets. Supplementary Table 4. Summary of the genome features of the assembled strains. Supplementary Table 5. Functional enrichment analysis of core orthologs present more than 90 % strainsSupplementary Table 6. Functional enrichment analysis of clade specific orthologs. Supplementary Table 7 Number of environmental-related orthologs in each genome and their percentage in each clade. Supplementary Table 8. Summary of transposase in the core genes and clade-specific genes of the assembled genomes. Supplementary Table 9. Summary of plasmids assembled from PacBio sequencing libraries. Supplementary Table 10. COG and KEGG functional annotation of the non-redundant plasmid genes.

附加文件2：补充表1。用于宏基因组分析的平扁巨蛤（Gigantidas platifrons）样本信息及测序数据汇总。补充表2。基于大肠杆菌（E. coli）菌株基因组构建的测试数据集。补充表3。利用大肠杆菌测试数据集，通过不同分箱方法获得的组装分箱结果汇总。补充表4。组装菌株的基因组特征汇总。补充表5。在90%以上菌株中存在的核心直系同源基因的功能富集分析。补充表6。支系特异性直系同源基因的功能富集分析。补充表7。各基因组中环境相关直系同源基因的数量及其在各支系中的占比。补充表8。组装基因组的核心基因与支系特异性基因中转座酶的相关汇总。补充表9。基于PacBio测序文库组装得到的质粒结果汇总。补充表10。非冗余质粒基因的COG与KEGG功能注释。