Additional file 5 of Genomic analysis of PLNTY-like tumor progression into epithelioid glioblastoma: a case report

Additional file 5: Table S4. Structural variants detected in both PLNTY-like tumor and three E-GB samples or in all three E-GB samples, but not in PLNTY. Table presents information of the variant location, variant type, gene that variants locate to and quality (variants with QUAL<30 were filtered out). Genotype, number of altered DNA reads (AlleleDepth), total number of DNA reads (Depth), genotype quality (GenotypeQual), likelihood of variant to be real (NormalizedLikelihood, LogOddsREF & LOgOddsReal), spanning reads (NSpanningReads) and discordant read pairs supporting the variant (NDiscordantReads) are also reported in all samples (Germline, E-GB FFPE, E-GB FF, E-GB CL and PLNTY).补充文件5：表S4。本表格收录了在类PLNTY肿瘤与3份E-GB样本，或全部3份E-GB样本中检出，但未在PLNTY样本中检出的结构变异。表格涵盖变异位点、变异类型、变异所在基因及变异质量的相关信息（QUAL值小于30的变异已被过滤）。本表格同时报告了所有样本（生殖系样本、E-GB福尔马林固定石蜡包埋（FFPE）样本、E-GB新鲜冰冻（FF）样本、E-GB细胞系（CL）样本及PLNTY样本）的基因型、变异等位基因测序深度（AlleleDepth）、总DNA测序深度（Depth）、基因型质量评分（GenotypeQual）、变异真实性似然值（标准化似然值（NormalizedLikelihood）、参考序列对数似然比（LogOddsREF）与变异序列对数似然比（LogOddsReal））、跨变异读段数（NSpanningReads）以及支持该变异的不一致读对数目（NDiscordantReads）。