Data and code of "Germline mutation rate predicts cancer mortality across 37 vertebrate species" article

Data and code used in this article.

The "Data.csv" file contains information about each species class, common name, average yearly mutation rate, trophic level, number of animals per species that died from cancer, records of mortality per species, the minimum confidence interval (CI) for the cancer mortality values, the maximum CI for the cancer mortality values, the standard error (SE) of the records of mortality per species, cancer mortality, average parental age (measured in months), maximum lifespan (measured in months), average parental age (measured in months), and whether a species is reported as domesticated/semidomesticated or not. The way the authors obtained these data, and the original sources of these data, are described in the methodology section of the article.

The "Regression_analyses.R" file is the code we used in the regression analyses conducted in this article. The .phy file is the phylogenetic tree used in the regression analyses.

The .txt, .nwk, .Rproj, and "germFit.R" files are the data and code we used for comparing the different models of phenotype evolution (comparison of 3 different models: Ornstein–Uhlenbeck, Brownian, and Early Burst).

本文所用数据集与代码。
其中《Data.csv》文件包含各物种类别、俗名、年均突变率、营养级、各物种因癌症死亡的个体数、各物种的死亡记录、癌症死亡率的最小置信区间（CI）、癌症死亡率的最大置信区间、各物种死亡记录的标准误（SE）、癌症死亡率、平均亲本年龄（单位为月）、最大寿命（单位为月）、平均亲本年龄（单位为月），以及某物种是否被报道为驯化/半驯化物种。本文作者获取这些数据的方式及数据原始来源已在文章的方法学部分详述。
《Regression_analyses.R》文件为本文所开展回归分析所用的代码。.phy格式文件为回归分析所用的系统发育树。
.txt、.nwk、.Rproj及《germFit.R》文件为我们用于比较不同表型进化模型（共3种模型：奥恩斯坦-乌伦贝克（Ornstein–Uhlenbeck）模型、布朗运动（Brownian）模型以及早爆发（Early Burst）模型）所用的数据集与代码。