SH1036618.10FU

UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.

UNITE 提供了一套统一的方法，用于界定、识别、传播及处理基于DNA的物种假说（Species Hypotheses，简称SH）。国际核酸序列数据库中的所有真菌内转录间隔区（Internal Transcribed Spacer，简称ITS）序列，将通过一组动态距离阈值（范围约0.5%至3.0%）被聚类至近似物种水平。所有物种假说均会被赋予以数字对象唯一标识符（Digital Object Identifier，简称DOI）为格式的唯一稳定名称，其分类学与生态学注释将通过分布式网络化第三方注释工作完成验证。物种假说将尽可能结合其包含的所有序列的鉴定结果，关联至对应的分类单元名称及其各级分类层级（如门、纲、目等）。研究人员会为每个物种假说挑选一条自动或人工指定的代表序列。这些序列已发布于https://unite.ut.ee/repository.php，可供科研社群用于本地序列相似性搜索、新一代测序分析流程等科研场景。随着公共真菌ITS序列的数量不断增长，该系统与配套数据集将自动完成更新。