Supplementary Material.zip

Supplementary Figure 1 | Genes that presented three types of AS events (CCDC51, PIK3CG, MCEMP1, STRADA, and ATP2A3). Supplementary Figure 2 | SNP annotation results from ensemble VEP. Supplementary Table 1 | Information of healthy cows and subclinical mastitis cows. Supplementary Table 2 | The list of DEGs and DELs. Supplementary Table 3 | Pathway of DEGs and DELs. Supplementary Table 4 | Target genes of lncRNAs. Supplementary Table 5 | Co-expression network of LncRNAs, target genes, and key pathways. Supplementary Table 6 | The list of DELs adjacent to SCC, SCS, and white blood cell count QTLs. Supplementary Table 7 | all AS events. Supplementary Table 8 | The list of 1,621个DSGs. AS SNPs from VEP annotator.

补充图1 | 存在三类可变剪接（Alternative Splicing，AS）事件的基因（CCDC51、PIK3CG、MCEMP1、STRADA及ATP2A3）
补充图2 | 来自Ensembl变异效应预测器（Variant Effect Predictor，VEP）的单核苷酸多态性（Single Nucleotide Polymorphism，SNP）注释结果
补充表1 | 健康奶牛与亚临床乳腺炎奶牛的相关信息
补充表2 | 差异表达基因（Differentially Expressed Genes，DEGs）与差异表达长链非编码RNA（Differentially Expressed Long Non-Coding RNAs，DELs）列表
补充表3 | 差异表达基因与差异表达长链非编码RNA的通路分析结果
补充表4 | 长链非编码RNA（Long Non-Coding RNAs，lncRNAs）的靶基因
补充表5 | 长链非编码RNA、靶基因与关键通路的共表达网络
补充表6 | 与体细胞数（Somatic Cell Count，SCC）、体细胞评分（Somatic Cell Score，SCS）及白细胞计数数量性状位点（Quantitative Trait Locus，QTLs）相邻的差异表达长链非编码RNA列表
补充表7 | 全部可变剪接事件
补充表8 | 1621个差异剪接基因（Differentially Spliced Genes，DSGs）列表，以及基于VEP注释器得到的可变剪接相关单核苷酸多态性