Nuclear genotypes from Coryphaena hippurus
收藏NIAID Data Ecosystem2026-03-14 收录
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https://zenodo.org/record/6949508
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资源简介:
This dataset comprises genotypes from nuclear microsatellites of Coryphaena hippurus samples.
We amplified 14 nuclear microsatellites; five of which were designed by Chapmann (pers. comm) and obtained from GenBank accession numbers: AY135025-AY132028, and AY189832. The rest nine loci were designed by Bayona-Vásquez et al. (2015). Microsatellites loci were amplified from 311 tissue samples from Coryphaena hippurus commonly know as mahi-mahi. Samples were obtained across nine localities within the Tropical Eastern Pacific: Bahía Magdalena (BM); Punta Lobos (PL); Cabo San Lucas (CSL); Guaymas (GU), Mazatlan (MZ); Chiapas (PM); Ecuador (EC); Perú (PE); and ocean sample (OC). Genotypes were recorded in three and two digits. Missing data coded as -9.
Geographic coordinates of sample localities:
Bahía Magdalena (BM): 24.579118, -111.998283
Punta lobos (PL): 23.413503, -110.234702
Cabo San Lucas (CSL) : 22.869653, -109.898667
Guaymas, Sonora (GU): 27.825287, -110.933325
Oceanic sample (OC): 11.886755, -122.880087
Mazatlán, Sinaloa (MZ): 23.192460, -106.471719
Puerto Madero, Chiapas (PM):14.664185, -92.482619
Ecuador (EC):-1.484832, -81.457839
Perú (PE): -12.184145, -77.250531
本数据集包含棘鲯鳅(*Coryphaena hippurus*)样本的核微卫星基因型数据。
本研究共扩增14个核微卫星位点:其中5个由Chapmann(个人通信,未正式发表)设计,序列获取自GenBank登录号AY135025~AY132028及AY189832;剩余9个位点由Bayona-Vásquez等人(2015)开发。
上述微卫星位点的扩增模板取自311份俗称为mahi-mahi的棘鲯鳅组织样本。样本采集自东热带太平洋海域的9个采样点:马格达莱纳湾(BM)、洛沃斯角(PL)、圣卢卡斯角(CSL)、索诺拉州瓜伊马斯(GU)、锡那罗亚州马萨特兰(MZ)、恰帕斯州马德罗港(PM)、厄瓜多尔(EC)、秘鲁(PE)以及远洋样本(OC)。
基因型以2位或3位数字记录,缺失数据编码为-9。
各采样点的地理坐标如下:
马格达莱纳湾(BM):24.579118, -111.998283
洛沃斯角(PL):23.413503, -110.234702
圣卢卡斯角(CSL):22.869653, -109.898667
索诺拉州瓜伊马斯(GU):27.825287, -110.933325
远洋样本(OC):11.886755, -122.880087
锡那罗亚州马萨特兰(MZ):23.192460, -106.471719
恰帕斯州马德罗港(PM):14.664185, -92.482619
厄瓜多尔(EC):-1.484832, -81.457839
秘鲁(PE):-12.184145, -77.250531
创建时间:
2022-11-23



