Datasets - Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes

Title: Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes Authors: Francisco Nadal-Molero(1), Riccardo Roselli(1), Silvia Garcia-Juan(1), Alicia Campos-Lopez(1), Ana-Belen Martin-Cuadrado(1*) SUPPLEMENTARY FILES Supplementary File S1. Sequences of cMITEs detected in Bacteria genomes (fasta format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”. Supplementary File S2. Sequences of cMITEs detected in the Archaea genomes (fasta format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”. Supplementary File S3. Sequences of vMITEs detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (fasta format). Virus, microbial host (if known) and inferred NCBI-taxonomy is stated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Virus|Name|Host”. Supplementary File S4. Sequences of si-vMITEs detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (fasta format). Virus, microbial host (if known) and inferred NCBI-taxonomy are stated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|Ident.Method.by.DB|Host”. Supplementary Files S5. Cytoscape networks. (A) Figure 1A, (B) Figure 1B. Supplementary File S6. Sequences of cMITEs obtained from 5837 genomes of Neisseriales. The structure of the MITE name is: “Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”. Supplementary File S7. Sequences of si-vMITEs obtained from 5837 genomes of Neisseriales. The structure of the MITE name is: “Accession|Genome|start|end|Host”. Supplementary File S8. Sequences of cMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is: “Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”. Supplementary File S9. Sequences of si-vMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is: “Accession|Genome|start|end|Host”.标题：通过原核生物与病毒基因组中的保守微型反向重复转座元件（Miniature Inverted-repeat Transposable Elements，MITE）揭示宿主-寄生虫关系 作者：Francisco Nadal-Molero(1)、Riccardo Roselli(1)、Silvia Garcia-Juan(1)、Alicia Campos-Lopez(1)、Ana-Belen Martin-Cuadrado(1*)（其中(1*)为通讯作者） 补充文件 补充文件S1：细菌基因组中检测到的保守型MITE（cMITE）序列（fasta格式）。每条序列的名称均标注了其宿主微生物物种与推断的美国国家生物技术信息中心（National Center for Biotechnology Information，NCBI）分类学信息。MITE的命名格式为：Accession|Genome|start|end|TSD（靶位点重复，Target Site Duplication）|TIRlength|MITETracker_group|Lineage 补充文件S2：古菌基因组中检测到的保守型MITE（cMITE）序列（fasta格式）。每条序列的名称均标注了其宿主微生物物种与推断的NCBI分类学信息。MITE的命名格式为：Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage 补充文件S3：NCBI与IMG/VR v.4.1数据库病毒序列中检测到的病毒型MITE（vMITE）序列（fasta格式）。每条序列的名称均标注了病毒信息、已知的微生物宿主及推断的NCBI分类学信息。MITE的命名格式为：Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Virus|Name|Host 补充文件S4：NCBI与IMG/VR v.4.1数据库病毒序列中检测到的si-vMITE序列（fasta格式）。每条序列的名称均标注了病毒信息、已知的微生物宿主及推断的NCBI分类学信息。MITE的命名格式为：Accession|Genome|start|end|Ident.Method.by.DB|Host 补充文件S5：Cytoscape网络图。(A) 对应图1A，(B) 对应图1B 补充文件S6：从5837个奈瑟菌目（Neisseriales）基因组中获取的保守型MITE（cMITE）序列。MITE的命名格式为：Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage 补充文件S7：从5837个奈瑟菌目基因组中获取的si-vMITE序列。MITE的命名格式为：Accession|Genome|start|end|Host 补充文件S8：从46051个拟杆菌门（Bacteroidota）基因组中获取的保守型MITE（cMITE）序列。MITE的命名格式为：Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage 补充文件S9：从46051个拟杆菌门基因组中获取的si-vMITE序列。MITE的命名格式为：Accession|Genome|start|end|Host