Additional file 12 of Conserved associations between G-quadruplex-forming DNA motifs and virulence gene families in malaria parasites

Additional file 12 Table S7. Putative G-quadruplex-forming sequences in the genomes of Plasmodium parasites, found by QGRS Mapper. Genomes were downloaded from PlasmoDB, v. 44, and searched using QGRS Mapper with the parameters: regex: G3N(0 − 11)G3N(0 − 11)G3N(0 − 11)G3, max length: 45, min G-group: 3, loop size: 0–11. “RC_Location Calculated” refers to the location of PQSs on the antisense strand, relative to the 5′ end of the sense strand. The “Strand (cf gene or nearest gene)” category was denoted as antisense if the PQS was on the opposite strand of its nearest gene, or sense if the PQS was on the same strand as its nearest gene. The “distance from nearest gene” was positive if the PQS was upstream of the nearest gene, negative if the PQS was downstream of the nearest gene, or equal to 0 if the PQS was in the coding sequence of the nearest gene.

补充文件12 表S7。通过QGRS Mapper在疟原虫基因组中鉴定的推定G-四链体（G-quadruplex）形成序列。基因组从PlasmoDB v.44下载，并使用QGRS Mapper按以下参数进行序列搜索：正则表达式：G3N(0−11)G3N(0−11)G3N(0−11)G3，最大长度：45，最小G簇数：3，环长度范围：0~11。"RC_Location Calculated（计算得到的反义链位置）"指PQS（推定G-四链体序列，Putative G-quadruplex sequence）在反义链上相对于正义链5'端的位置。"Strand (cf gene or nearest gene)（链类型（参照基因或最近基因））"类别中，若PQS位于其最近基因的互补链，则标记为反义链；若与最近基因位于同一条链，则标记为正义链。"与最近基因的距离"字段中，若PQS位于最近基因上游则取值为正，位于下游则取值为负，若位于最近基因的编码序列内则取值为0。