SNPsea: an algorithm to identify cell types, tissues, and pathways affected by risk loci
收藏Figshare2014-05-20 更新2026-04-29 收录
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https://figshare.com/articles/dataset/SNPsea_test_trait_associated_loci_for_enrichment_of_condition_specificity_of_gene_measurements_or_binary_annotations/871430
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资源简介：
Updated May 20, 2014. This archive contains data for: Slowikowski, et al. SNPsea: an algorithm to identify cell types, tissues, and pathways that affect risk loci. Bioinformatics (2014). doi:10.1093/bioinformatics/btu326 Please see the SNPsea documentation for more details: http://snpsea.readthedocs.org/en/latest/data.html CONTENTS GWAS SNPs on hg19 with P Celiac_disease-Trynka2011-35_SNPs.gwasHDL_cholesterol-Teslovich2010-46_SNPs.gwasMultiple_sclerosis-IMSGC-51_SNPs.gwasRed_blood_cell_count-Harst2012-45_SNPs.gwas GeneAtlas2004.gct.gz- Gene Atlas 2004 gene expression matrix (Affymetrix) ImmGen2012.gct.gz- ImmGen 2012 gene expression matrix (Affymetrix) FANTOM2014.gct.gz- RIKEN FANTOM5 gene expression matrix (CAGE) GO2013.gct.gz- Gene Ontology 2013 gene annotation matrix (binary annotations) NCBIgenes2013.bed.gz- Homo sapiens NCBI gene intervals Lango2010.txt.gz- LD-pruned SNPs TGP2011.bed.gz- 1000 Genomes Project SNP linkage disequilibrium (LD) intervals
创建时间：
2014-05-20
