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Supplement 1. Raw species and genus level incidence matrices, alpha diversity estimates and elevation and beta diversity estimates with WorldClim abiotic variables.

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Figshare2016-08-10 更新2026-04-29 收录
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https://figshare.com/articles/dataset/Supplement_1_Raw_species_and_genus_level_incidence_matrices_alpha_diversity_estimates_and_elevation_and_beta_diversity_estimates_with_WorldClim_abiotic_variables_/3564351
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File List morpho_pa.csv (MD5: 8b115668503eb5aa066e3937e8a241ff) genus_pa.csv (MD5: 0bb32638ff9c64fea79c3ffea7ce3abf) Alpha_Data.csv (MD5: 9ffb7b482d3e3672f2c6e941849eff35) Beta_Data.csv (MD5: 70b49e0b30e256f74fec765a15f6a896) Description The morpho_pa file contains the reported incidence matrices synthesized here. The data file is organized by reference (column 1), species (column 2) and species incidences by elevation (Columns 3–24). The genus_pa file contains the genus abundance matrices created here based on the species level data reported by the authors in their original publication. Values represent the number of species present at particular elevations. The data file is organized by reference (column 1), species (column 2) and species incidences by elevation (Columns 3–24). The Alpha_Data file contains the morphological and phylogenetic calculations of alpha diversity. The coarse geographic location of the study, the reference and the elevation (Column 1–3). Taxonomic richness species or genus are in Column 4 and 5). Phylogenetic diversity (6 and 7). Two measures of phylogenetic community structure (NRI and NTI) calculated using the independent swap algorithm (Column 8 and 9). Phylocom outputs of both NRI and NTI using the four null models used to estimate phylogenetic community structure are presented in sequence. Column 9–28: (Gotelli and Entsminger’s independent swap algorithm); Column 29–47 (Species in each sample become random draws from phylogeny pool); Column 48-66 (Species in each sample become random draws from sample pool); Column 67–85 (This null model shuffles species labels across the entire phylogeny) The Beta_Data file contains the source information for each study (Columns 1 and 2), the pairwise elevational distance between sites (Column 3), the phylobetadiversity between sites (Column 4 and 5), the Jaccard Classic (Column 6), the average absolute latitude of the study location (Column 7), the maximum elevation of the study site (Column 8) and the WorldClim data of temperature and precipitation (BIO1 – BIO19) (Column 9–27).

文件清单:morpho_pa.csv(MD5:8b115668503eb5aa066e3937e8a241ff)、genus_pa.csv(MD5:0bb32638ff9c64fea79c3ffea7ce3abf)、Alpha_Data.csv(MD5:9ffb7b482d3e3672f2c6e941849eff35)、Beta_Data.csv(MD5:70b49e0b30e256f74fec765a15f6a896) 1. morpho_pa.csv:包含本文整合的报道性物种发生矩阵。该数据文件以文献(第1列)、物种(第2列)及各海拔梯度下的物种发生情况(第3至24列)进行组织。 2. genus_pa.csv:包含基于作者原始发表中报道的物种水平数据构建的属级丰度矩阵,数值表示特定海拔下出现的物种数量。该数据文件以文献(第1列)、物种(第2列)及各海拔梯度下的物种发生情况(第3至24列)进行组织。 3. Alpha_Data.csv:包含α多样性(alpha diversity)的形态学与系统发育计算结果。数据涵盖研究的粗略地理位置、文献标识及海拔梯度(第1至3列);分类学丰富度(物种或属,第4、5列);系统发育多样性(phylogenetic diversity,第6、7列);采用独立置换算法(independent swap algorithm)计算的两类系统发育群落结构指标——净亲缘关系指数(NRI,Net Relatedness Index)与最近亲缘关系指数(NTI,Nearest Taxon Index,第8、9列)。本文依次呈现了用于估算系统发育群落结构的四种零模型下的Phylocom输出结果:第9至28列为Gotelli与Entsminger的独立置换算法;第29至47列为“每个样本中的物种从系统发育库中随机抽取”的零模型;第48至66列为“每个样本中的物种从样本库中随机抽取”的零模型;第67至85列为“该零模型在整个系统发育树上随机置换物种标签”的零模型。 4. Beta_Data.csv:包含每项研究的来源信息(第1、2列)、样点间的成对海拔距离(第3列)、样点间的系统发育β多样性(第4、5列)、经典雅卡尔指数(Jaccard Classic,第6列)、研究样地的平均绝对纬度(第7列)、研究样地的最大海拔(第8列),以及气温与降水的WorldClim数据集(BIO1至BIO19,第9至27列)。
创建时间:
2016-08-10
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