Genome-Resolved Metagenomics of Rice Straw Degradation Experiments in Colombian Fields

Dataset encompassing:

Mid-quality MAGs.
High-quality MAGs.
Associated metadata useful to track down the downstream analysis process of the MAGs.
Scripts run to characterize, annotate and organize the samples/MAGs through tools such as dbCAN3, Prokka, COGClassifier, KEGG Decoder, FastANI, MAGFlow, FastQC, nf-core/mag, FetchMG, GTDB-Tk2, among others.
Mock community information to ensure the reliability of the DNA extraction and bioinformatics pipeline.
R executable script to perform downstream processing and data visualization.
Files to generate iTOL figures.

本数据集涵盖以下组成部分：中等质量宏基因组组装基因组（Metagenome-Assembled Genomes，以下简称MAGs）与高质量宏基因组组装基因组；可用于追踪MAGs下游分析流程的配套元数据；通过dbCAN3、Prokka、COGClassifier、KEGG Decoder、FastANI、MAGFlow、FastQC、nf-core/mag、FetchMG、GTDB-Tk2等工具对样本及MAGs开展表征、注释与整理工作的运行脚本；用于验证DNA提取及生物信息学流程可靠性的模拟群落信息；用于执行下游数据处理与可视化的R可执行脚本；以及用于生成iTOL可视化图表的相关文件。