Supplementary Material

Supplementary Material for 'Pangenome evolution in Escherichia coli is sequence type, not phylogroup, specific'. <br> pangenome_data.zip contains (for each ST): <br> <strong>ST_updated_download.txt</strong> - the download list from Enterobase including accession numbers, Bio Project IDs and sample IDs. <br> <strong>ST_gene_presence_absence_roary.csv</strong> - gene presence/absence matrix output by Panaroo <br> <strong>ST_pan_genome_reference.fa</strong> - linear reference genome output by Panaroo

《大肠杆菌泛基因组进化呈现序列型（sequence type, ST）特异性而非系统群特异性》补充材料。<br>pangenome_data.zip 压缩包包含针对每个序列型（ST）的如下文件：<br><strong>ST_updated_download.txt</strong>：来自Enterobase的下载列表，包含登录号、生物项目ID以及样本ID。<br><strong>ST_gene_presence_absence_roary.csv</strong>：由Panaroo生成的基因存在/缺失矩阵文件。<br><strong>ST_pan_genome_reference.fa</strong>：由Panaroo生成的线性参考基因组序列文件。