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Genomic data of Nanmaohu Park Malvaceae plant specimen, RL0312

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DataCite Commons2025-05-26 更新2026-05-03 收录
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http://gigadb.org/dataset/101375
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001742. Preliminary identification is that it is of the family Malvaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1245390000bp. We have generated 61040000000bp of data, which gives a theoretical coverage of 49x.

本研究于中国云南瑞丽植物园开展维管植物(vascular plants)样本采集工作。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围740米至1200米(海拔基准为海平面)。本次共采集1093份维管植物样本,选取幼叶进行测序,并同步制备凭证标本,所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。 其中761份样本成功提取到可用于测序的DNA;剩余332份样本仅完成凭证标本制备,相关植物图像已公开于本数据集。 上述761份样本涵盖隶属于49目、137科的689种维管植物。 目前研究团队仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数样本实现了科级阶元以上的精准鉴定。 本数据集包含凭证标本编号为HCNGB:RUILI:HCNGB_00001742的植物的基因组数据与图像。经初步鉴定,该样本隶属于锦葵科(Malvaceae)。 通过测序数据的K-mer分布分析,预测该样本的基因组大小为1245390000bp;本次共生成61040000000bp的测序数据,理论测序深度达49×。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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