Additional file 1 of Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans

Additional file 1: previous_studies_with_ancient_data.xlsx. Table S1. Genome-wide aDNA data in addition to those curated in Marciniak and Perry Nat Rev Genet 2017. Table S2. Summary of genome-wide aDNA studies by year of publication and geographic region. The authors apologize for any accidental omissions of published ancient human or archaic hominin genomic data sets. These data are otherwise intended to be current as of December 2020. SNP, single-nucleotide polymorphism; WGS, whole-genome sequencing. * > 1× indicates an average coverage greater than 1-fold. ** > 5× indicates an average coverage greater than 5-fold. ‡Geographic region definitions: - Central Europe: Croatia, the Czech Republic, Hungary, Austria, Poland, Germany, Switzerland, Serbia, Slovakia. - Eastern Europe: Belarus, the Ukraine, Russia, Bulgaria, Montenegro, Caucasus, Romania, Moldova, Armenia. - Northern Europe: Estonia, Denmark, Sweden, Lithuania, Latvia, Ireland, United Kingdom, Norway, Netherlands, Belgium, France, Luxembourg, Finland, Iceland, Isle of Man. - Southern Europe: Spain, Portugal, Italy, Greece, Macedonia. - Asia: Nepal, China, India, Pakistan, Mongolia, Thailand, Cambodia, Vietnam, Laos, Malaysia, Indonesia, Philippines, Japan, Kazakhstan, Uzbekistan, Tajikistan, Turkmenistan, Afghanistan, Kyrgyzstan. - Middle East: Iran, Israel, Turkey, Jordan, Lebanon, Yemen. - North America: Canada, United States, Greenland, Central America, the Caribbean, Mexico, Bahamas, − South America: Brazil, Chile, Bolivia, Peru, Argentina, Venezuela. - Africa: Ethiopia, Egypt, Chad, Nigeria, Morocco. - Oceania: Vanuatu, Australia, Tonga, Solomon Islands, French Polynesia. §For subsets of samples without reported specific dates.

补充文件1：包含既往研究的古数据.xlsx。表S1：除Marciniak与Perry于2017年发表于《Nature Reviews Genetics》的整理数据外的全基因组古代DNA（ancient DNA, aDNA）数据集。表S2：按发表年份与地理区域分类的全基因组古代DNA研究汇总。作者谨为意外遗漏已发表的古人类或古老人亚族基因组数据集致歉。本数据集截至2020年12月均为最新版本。单核苷酸多态性（single-nucleotide polymorphism, SNP）；全基因组测序（whole-genome sequencing, WGS）。* ＞1× 表示平均测序深度大于1倍。** ＞5× 表示平均测序深度大于5倍。‡ 地理区域定义如下：- 中欧：克罗地亚、捷克共和国、匈牙利、奥地利、波兰、德国、瑞士、塞尔维亚、斯洛伐克。- 东欧：白俄罗斯、乌克兰、俄罗斯、保加利亚、黑山、高加索地区、罗马尼亚、摩尔多瓦、亚美尼亚。- 北欧：爱沙尼亚、丹麦、瑞典、立陶宛、拉脱维亚、爱尔兰、英国、挪威、荷兰、比利时、法国、卢森堡、芬兰、冰岛、马恩岛。- 南欧：西班牙、葡萄牙、意大利、希腊、马其顿。- 亚洲：尼泊尔、中国、印度、巴基斯坦、蒙古国、泰国、柬埔寨、越南、老挝、马来西亚、印度尼西亚、菲律宾、日本、哈萨克斯坦、乌兹别克斯坦、塔吉克斯坦、土库曼斯坦、阿富汗、吉尔吉斯斯坦。- 中东：伊朗、以色列、土耳其、约旦、黎巴嫩、也门。- 北美洲：加拿大、美国、格陵兰、中美洲、加勒比地区、墨西哥、巴哈马。- 南美洲：巴西、智利、玻利维亚、秘鲁、阿根廷、委内瑞拉。- 非洲：埃塞俄比亚、埃及、乍得、尼日利亚、摩洛哥。- 大洋洲：瓦努阿图、澳大利亚、汤加、所罗门群岛、法属波利尼西亚。§ 针对未报告具体采样日期的样本子集。