Supplementary data for the manuscript titled "Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria"

This repository contains the following files:bif_263_fna.zip - FASTA file with genomic sequences of 263 reference <i>Bifidobacterium</i> genomesbif_263_subsystem_proteins.zip - FASTA file with 39589 protein sequences of 589 curated functional roles predicted in 263 reference <i>Bifidobacterium</i> genomesselected_gbk_files.zip - GenBank files of six reference <i>Bifidobacterium</i> genomes. These files have the specific locus tags that were reported in several supplementary tables (RNA-seq data of <i>Bifidobacterium catenulatum</i> subsp. <i>kashiwanohense </i>Bg42221_1E1 and regulon reconstructions)<br>

本仓库包含以下文件：
bif_263_fna.zip —— 包含263株参考双歧杆菌属（*Bifidobacterium*）基因组序列的FASTA格式文件。
bif_263_subsystem_proteins.zip —— 包含从263株参考双歧杆菌属基因组中预测得到的589个经人工审核功能角色对应的39589条蛋白质序列的FASTA格式文件。
selected_gbk_files.zip —— 6株参考双歧杆菌属基因组的GenBank格式文件。这些文件带有多份补充表格中提及的特定位点标签，相关研究涉及链状双歧杆菌柏川亚种（*Bifidobacterium catenulatum* subsp. *kashiwanohense*）Bg42221_1E1的转录组测序（RNA-seq）数据以及调控子重建工作。